PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON41125.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

ARF

Protein Properties

Length: 1116aa MW: 123257 Da PI: 6.763

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON41125.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.6	2e-22	136	237	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++++l+ PON41125.1 136 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKQHLL 231 99***************************9445444.38*********************************************..5689999 PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ PON41125.1 232 LGIRRA 237 ***997 PP
2	Auxin_resp	116.7	2e-38	262	345	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka+ +++s+GmRf+m+fete+s +rr++Gt++g+sdldp rW+nS+Wr+L+ PON41125.1 262 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVGgNHMSLGMRFRMMFETEESGTRRYMGTITGISDLDPARWKNSQWRNLQ 345 79*******************************989******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1116 aa Download sequence
MKAPANGVGG GSAAAAPPNP CEGTEKKSIN PELWQACAGP LVNLPPAGTH VLYFPQGHSE 60 QVAASMKKDV DAQIPNYTNL PSKLLCLLHN VTLHADPETD EVYAQMTLQP VHIVDKDALL 120 RSDLALKSNK PQPEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD 180 LHDNVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV LFIRDEKQHL LLGIRRANRQ 240 PTNLSSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKAVGGNH 300 MSLGMRFRMM FETEESGTRR YMGTITGISD LDPARWKNSQ WRNLQVGWDE STAGERRNRV 360 SIWEIEPVTA PFFICPPPFF RSKRPRQPGM PDDDSSDLDS LFKRTLPWLG DDMCMKDNQG 420 FPGFSLVQWM NMQQNPALAN SIQPNYMQHS FSGPVIQNLP GADLSRQLGL SAPQVSQANN 480 LQFNSQRIPQ QAQQLDQLSE LPSTLNALGS IIQPQPLSDV TQQPRQNIVN QTLSSSQVQA 540 QILQPQNIVQ TSNILQQQTS MQNNQLQRNL SQNQHHQPQI TSQSQQQNII QSQLPDQINQ 600 QLRHISDNQL RLQLLEKLQQ QQQSILAQQS SLQQPAQLTQ TQIQDQQRQL LDVSQSFSRS 660 ATSPQMLEMP QMVTSSLLQP NTITQQMTKN NVNQNNGRFS QTPHQPKLQQ QQHGMLSEMP 720 GHMGLPPNSV TNQVAVGGSS VMTGAVGAGQ SGITDDVPSC STSPSTNNCS NGVQPVMNSR 780 VHRSTVLAED MAQSAATILS PNALETVSSN VNFIKEFQQK SEVKPLLNIP RSQSQGICTP 840 HTYMNGAAAQ TDYLDTSSST TSVCLSQNDV NLQQNNNQFL FNPQSMLFRE ASQDREVQAD 900 QGNNVSYGNT IDGQLGVPLN PDPLLTKGVV GLGKDFPSNL SSGGILNCYE NSKDAQQELS 960 SSMVSQSFGV PDMTFNSIDS TINDSSFLNR GPWAPAPQLQ RMRTYTKVYK RGAVGRSIDI 1020 TRYSGYDELK QDLARRFGIE GQLEDRQRVG WKLVYKDHEN DILLVGDDPW QEFVNCVRCI 1080 KILSPQEVQQ MSLDGDFGGS GVLPNQACSS SDGGNA

Sequence ? help Back to Top

Protein Sequence Length: 1116 aa Download sequence

MKAPANGVGG GSAAAAPPNP CEGTEKKSIN PELWQACAGP LVNLPPAGTH VLYFPQGHSE  60
QVAASMKKDV DAQIPNYTNL PSKLLCLLHN VTLHADPETD EVYAQMTLQP VHIVDKDALL  120
RSDLALKSNK PQPEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD  180
LHDNVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV LFIRDEKQHL LLGIRRANRQ  240
PTNLSSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKAVGGNH  300
MSLGMRFRMM FETEESGTRR YMGTITGISD LDPARWKNSQ WRNLQVGWDE STAGERRNRV  360
SIWEIEPVTA PFFICPPPFF RSKRPRQPGM PDDDSSDLDS LFKRTLPWLG DDMCMKDNQG  420
FPGFSLVQWM NMQQNPALAN SIQPNYMQHS FSGPVIQNLP GADLSRQLGL SAPQVSQANN  480
LQFNSQRIPQ QAQQLDQLSE LPSTLNALGS IIQPQPLSDV TQQPRQNIVN QTLSSSQVQA  540
QILQPQNIVQ TSNILQQQTS MQNNQLQRNL SQNQHHQPQI TSQSQQQNII QSQLPDQINQ  600
QLRHISDNQL RLQLLEKLQQ QQQSILAQQS SLQQPAQLTQ TQIQDQQRQL LDVSQSFSRS  660
ATSPQMLEMP QMVTSSLLQP NTITQQMTKN NVNQNNGRFS QTPHQPKLQQ QQHGMLSEMP  720
GHMGLPPNSV TNQVAVGGSS VMTGAVGAGQ SGITDDVPSC STSPSTNNCS NGVQPVMNSR  780
VHRSTVLAED MAQSAATILS PNALETVSSN VNFIKEFQQK SEVKPLLNIP RSQSQGICTP  840
HTYMNGAAAQ TDYLDTSSST TSVCLSQNDV NLQQNNNQFL FNPQSMLFRE ASQDREVQAD  900
QGNNVSYGNT IDGQLGVPLN PDPLLTKGVV GLGKDFPSNL SSGGILNCYE NSKDAQQELS  960
SSMVSQSFGV PDMTFNSIDS TINDSSFLNR GPWAPAPQLQ RMRTYTKVYK RGAVGRSIDI  1020
TRYSGYDELK QDLARRFGIE GQLEDRQRVG WKLVYKDHEN DILLVGDDPW QEFVNCVRCI  1080
KILSPQEVQQ MSLDGDFGGS GVLPNQACSS SDGGNA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein