PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON40244.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

MYB

Protein Properties

Length: 301aa MW: 34409.8 Da PI: 7.7048

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON40244.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.2	1.8e-13	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed++l +++ +G g+W ++ g++R++k+c++rw +yl PON40244.1 14 RGAWTILEDKILTAYINVHGEGNWYNLPKLAGLNRCGKSCRLRWVNYL 61 89********************************************97 PP
2	Myb_DNA-binding	48.2	2.4e-15	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E++l+++ +k+lG++ W+ Ia +++ gRt++++k++w++ PON40244.1 67 RGSISEDEEDLIIKMHKLLGNR-WSIIAGRLP-GRTDNEIKNYWNTT 111 78889***************.*****.**********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MGRRPCCSKL GLNRGAWTIL EDKILTAYIN VHGEGNWYNL PKLAGLNRCG KSCRLRWVNY 60 LRPDIKRGSI SEDEEDLIIK MHKLLGNRWS IIAGRLPGRT DNEIKNYWNT TLRKKLLEAP 120 NCNNDSINPK TKRKRSRPAL EPNNKVNNSN TKNIVKSHTV EPIRTKAFRF TSRVQELPAL 180 FQFPTPCTDK CGKYSEREFI LNHGSAMDKN QTSQEAGDLN IDSCYCEGQQ INEDLMIKAS 240 SSTTHDSHFP SLDDHEQHVS EKNWIMASAN IINNDHFSNI GDDLGELDFK SLECFLDLDE 300 E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	135	RKKLLEAPNCNNDSINPKTKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	1e-59	MYB family protein