PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON39941.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family M-type_MADS
Protein Properties Length: 292aa    MW: 32168.5 Da    PI: 7.2741
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON39941.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.82.9e-183684149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k ie+   r +tfskRr gi KKA+EL +LC+aev ++ifs++gk + y
  PON39941.1 36 KMIEDGDDRLITFSKRRSGIYKKASELVTLCGAEVGIVIFSPSGKPFSY 84
                6799999*************************************96655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MEANNTDTTT TTTTNNNNNN KNIVKKTKGR QKTQMKMIED GDDRLITFSK RRSGIYKKAS  60
ELVTLCGAEV GIVIFSPSGK PFSYGHPSIE SVANDILLSG TNAAGAASVD TATHPIFEAH  120
RRLRISELNQ QYNDLFGHLE TEKERRKEVQ KMTEEAAKEA PEGWWDSPVE GLSLDELKRR  180
LRSLEELHAN ITNHLKERKT MSDLGNTNNN NKKNTNNNNN NNNNDNNDNN APAAAALLGT  240
SSLFNLGFGE SCSSVKGSDP FVYPAERQGA AGFPHQVAAA YLPGFVYGHN QQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177183LKRRLRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.18e-35M-type_MADS family protein