PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON38876.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 225aa MW: 26010.9 Da PI: 9.3331 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.7 | 3.1e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++nrqvtfskRr+g++KKA+EL +LCdaev ++ifsstgklye++s PON38876.1 10 RIDNSTNRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSTGKLYEFAS 59 8***********************************************86 PP | |||||||
2 | K-box | 77.5 | 3.4e-26 | 78 | 170 | 8 | 98 |
K-box 8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +++++ + +q+e+a L+ +++ Lq++ R+l+G++L L++keLq+Le+qLe slk iR kK+++l+++i+el +k + +++en +L kk+ PON38876.1 78 QllNSTSEVKLWQREVAILRHQLQCLQENCRQLMGKELYGLNMKELQNLESQLEISLKGIRMKKEQMLTDEIQELIRKGNLIHQENVDLYKKV 170 1347889999*******************************************************************************9997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence |
MGRGKIVIRR IDNSTNRQVT FSKRRKGLIK KAKELAILCD AEVGLVIFSS TGKLYEFAST 60 SMKSVIERYN KSKDEHQQLL NSTSEVKLWQ REVAILRHQL QCLQENCRQL MGKELYGLNM 120 KELQNLESQL EISLKGIRMK KEQMLTDEIQ ELIRKGNLIH QENVDLYKKV ILIRQENVEL 180 QKEVYGTRDV TETTSGNNFI SYSLDNGEES NIPIHLQLSQ PSQQA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 1e-100 | MIKC_MADS family protein |