PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON38587.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

MYB_related

Protein Properties

Length: 614aa MW: 67771.5 Da PI: 9.5041

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON38587.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.9	4e-07	524	573	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ PON38587.1 524 RRPFSVSEVEALVRAVEKLGTGRWRDVKFHAFdnaKHRTYVDLKDKWKTL 573 678999******************9999999************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence
MMDCGFNDYP EPEVPRSCRS ARGRGPITKR WEGNRKHSCE ILASVAGNLL EKGDNSLHTD 60 ASCGKNLHDA CDSVISKKEV DEGQFLNEEL LELGSSLEKA FGCNPGFQSF CNPDKFNSEI 120 NPMSKDFRRS GLLNSNKKKA FDDSNFVPDV IGGKVLGVPE RKVEAEPTEL RNQSVKDKTM 180 TVTCGLEDLM KLEGKQPELV GPGCNVHTAS VRVVSRDDDE SSFGSAYPST MVKALGPPLG 240 TGNKRIKKIS DSSHWRVAPD VDGNYSSTDG KVKEVCCEER IGYTQENTQK IYPFKKRKFF 300 NQDFSTSNRG SNRDGTFDSS DKRINGKQGT AAIGGSSSMT GQHVFPNSKE CNVKLSIKSF 360 KVPELLIDIP TTETVGSLKR MVMDAVTSIL GEGLHVGILV QGKKVKDDNK TLVQTGISQY 420 NKHSNLGFIL EPEHSQTATS PFTKNESLLS RIKSQALTRH SVSLSGSVES DFNATPALGD 480 NLSNNTNNES KALIPVPRIS MEALAVVPFH RKSGHHEYLK RRIRRPFSVS EVEALVRAVE 540 KLGTGRWRDV KFHAFDNAKH RTYVDLKDKW KTLVHTARIS PQQRRGEPVP QGLLDRVLAA 600 QATGHIGSRN KRPK

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence

MMDCGFNDYP EPEVPRSCRS ARGRGPITKR WEGNRKHSCE ILASVAGNLL EKGDNSLHTD  60
ASCGKNLHDA CDSVISKKEV DEGQFLNEEL LELGSSLEKA FGCNPGFQSF CNPDKFNSEI  120
NPMSKDFRRS GLLNSNKKKA FDDSNFVPDV IGGKVLGVPE RKVEAEPTEL RNQSVKDKTM  180
TVTCGLEDLM KLEGKQPELV GPGCNVHTAS VRVVSRDDDE SSFGSAYPST MVKALGPPLG  240
TGNKRIKKIS DSSHWRVAPD VDGNYSSTDG KVKEVCCEER IGYTQENTQK IYPFKKRKFF  300
NQDFSTSNRG SNRDGTFDSS DKRINGKQGT AAIGGSSSMT GQHVFPNSKE CNVKLSIKSF  360
KVPELLIDIP TTETVGSLKR MVMDAVTSIL GEGLHVGILV QGKKVKDDNK TLVQTGISQY  420
NKHSNLGFIL EPEHSQTATS PFTKNESLLS RIKSQALTRH SVSLSGSVES DFNATPALGD  480
NLSNNTNNES KALIPVPRIS MEALAVVPFH RKSGHHEYLK RRIRRPFSVS EVEALVRAVE  540
KLGTGRWRDV KFHAFDNAKH RTYVDLKDKW KTLVHTARIS PQQRRGEPVP QGLLDRVLAA  600
QATGHIGSRN KRPK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	289	298	QKIYPFKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-101	MYB_related family protein