PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA12G12410.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

GRF

Protein Properties

Length: 389aa MW: 41562.5 Da PI: 8.8781

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G12410.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.3	1.3e-23	86	130	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e ONIVA12G12410.1 86 DSEPGRCRRTDGKKWRCSRDAVVDQKYCERHINRGRHRSRKHVEG 130 689***************************************986 PP
2	QLQ	58.8	1.7e-20	37	73	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK+++an+PvP+ Ll++i++ ONIVA12G12410.1 37 GPFTPTQWMELEHQALIYKHIVANAPVPAGLLLPIRR 73 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MAMATPTTNG SFLLGSGLDC GSSDVARMQG VLARVRGPFT PTQWMELEHQ ALIYKHIVAN 60 APVPAGLLLP IRRSLHPPLG YSGSADSEPG RCRRTDGKKW RCSRDAVVDQ KYCERHINRG 120 RHRSRKHVEG QSSHAAKATV PAIAQPPIGA SNGKLSGSHG VSNELTKTLA TNRMMLDKAN 180 LIERSQDYTN QQHNILQNNT KGDNWSEEMS SQADYAVIPA GSLMNTPQSA NLNPIPQQQR 240 CKQSLFGKGI QHDDIQLSIS IPVDNSDLPT NCNKAQMDHV VGGSSNGGNN TRASWIPGSW 300 EASIGGPLGE FFTNTSSASD DKGKSRHPPS LNLLADGHTT SPQLQSPTGV LQMTSFSSVP 360 SSTVSSPAGS LCNGLLTSGL VNAQTVQTL

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MAMATPTTNG SFLLGSGLDC GSSDVARMQG VLARVRGPFT PTQWMELEHQ ALIYKHIVAN  60
APVPAGLLLP IRRSLHPPLG YSGSADSEPG RCRRTDGKKW RCSRDAVVDQ KYCERHINRG  120
RHRSRKHVEG QSSHAAKATV PAIAQPPIGA SNGKLSGSHG VSNELTKTLA TNRMMLDKAN  180
LIERSQDYTN QQHNILQNNT KGDNWSEEMS SQADYAVIPA GSLMNTPQSA NLNPIPQQQR  240
CKQSLFGKGI QHDDIQLSIS IPVDNSDLPT NCNKAQMDHV VGGSSNGGNN TRASWIPGSW  300
EASIGGPLGE FFTNTSSASD DKGKSRHPPS LNLLADGHTT SPQLQSPTGV LQMTSFSSVP  360
SSTVSSPAGS LCNGLLTSGL VNAQTVQTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	2e-46	GRF family protein

Link Out ? help Back to Top
Ensembl	ONIVA12G12410.1