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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | ONIVA12G12160.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 333aa MW: 35714.5 Da PI: 4.8144 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 59.8 | 4.5e-19 | 96 | 149 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++++t+eq+++Le+ Fe+ +r++ e++ eLA++lg+ rqV vWFqNrRa++k
ONIVA12G12160.1 96 KRRLTAEQVRALERSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 149
4579*************98**********************************9 PP
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| 2 | HD-ZIP_I/II | 122 | 3.1e-39 | 95 | 185 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+krrl++eqv++LE+sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE d+++L++a+d+l + +++L +++e+Lr+++
ONIVA12G12160.1 95 RKRRLTAEQVRALERSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLELDFDRLRAAHDELLAGRTALAADNESLRSQV 185
8*****************9999******************************************************************997 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 333 aa Download sequence |
MCSMDDYSGR LVFSSAGAAP PCSSAGAGGG QMLLFGGHGG FVGGSPVMEE AELRRRRRKR 60 PFLTTTHDEL ELQMEDLVDE LYGVDEQGSS SAAARKRRLT AEQVRALERS FEEEKRKLEP 120 ERKSELARRL GIAPRQVAVW FQNRRARWKT KQLELDFDRL RAAHDELLAG RTALAADNES 180 LRSQVILLTE KLQANGKSPS PSPAPAEQTA VPAAPESAKS FQLEEGRRLY DAAGSTTTTN 240 GGGGGVAMPA ARVAAARAAS NDSPESYFAG ARSPPSSSED DCGGAGSDDD YPSSSVLLPV 300 DATLVGDAFE HAVAATVAAD EEAPLNSWEW FWN |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 53 | 61 | LRRRRRKRP |
| 2 | 54 | 60 | RRRRRKR |
| 3 | 144 | 152 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G01470.1 | 8e-30 | HD-ZIP family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | ONIVA12G12160.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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