PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G09070.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 282aa    MW: 30649.3 Da    PI: 6.9962
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G09070.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000155678123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C + F++   L  H+++H
  ONIVA12G09070.1 56 YTCSFCRREFRSAQALGGHMNVH 78
                     9********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MERMAKHYWA LWGAGVRSGW PAAAHGGGAE PSWEEKAFAQ DAAGHLGGCV WPPRSYTCSF  60
CRREFRSAQA LGGHMNVHRR DRARLRQCDD DDDDPIPPTV SICAPPPPPP PPPPLLPAAA  120
AAPDSPSPPS LLLQISSPKS TTADHHQNHQ QLQLQGTNSS PNSCIATIIK ESRNKARLFI  180
TTMPAPAPAT THDLGLGGGK DDDDSISISM EEIRRKRRRV DQPLTPTPSY SSERERRRED  240
DPAAADASNN KVIPSSSILV NQLAMDMVGR QEIDLELRLG ST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215219RKRRR
2216220KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-22C2H2 family protein