PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA12G08260.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 1366aa MW: 151916 Da PI: 7.4501

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G08260.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00035	1247	1270	1	22
EEET..TTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22 ++C C++sFs++ +L H r ONIVA12G08260.1 1247 FPCDieGCDMSFSTQQDLLLHKRD 1270 789999***************985 PP
2	zf-C2H2	11.9	0.0007	1330	1356	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg++F+ s++ rH r+ H ONIVA12G08260.1 1330 YECQepGCGQTFRFVSDFSRHKRKtgH 1356 899999****************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1366 aa Download sequence
MSLQPPAVEP PEWLRTLPVA PEYHPTLAEF ADPIAYILRI EPEASRYGIC KIVPPLPRPP 60 EDDTFRRLQA AFAAAASSNG DPSPTFPTRL QQVGLSARNR RAASRRVWES GERYTLEAFR 120 AKAAEFEPPR HAAPPRNPTH LQLEALFWAA CASRPFSVEY GNDMPGSGFA SPDELPDAAN 180 ATDVGETEWN MRVAPRARGS LLRAMARDVA GVTTPMLYVA MLYSWFAWHV EDHELHSLNF 240 LHFGKAKTWY GVPRDAMLAF EETVRVHGYA DDLNAIMAFQ TLNEKTTVLS PEVLLSAGVP 300 CCRLVQKAGE FVITFPGAYH SGFSHGFNCG EASNIATPHW LQVAKEAAIR RASTNCGPMV 360 SHYQLLYELA LSLRPREPKN FYSVPRSSRL RDKNKNEGDI MVKENFVGSV TENNNLLSAL 420 LDKNSCIIVP NADFFIPSFP VALESEVTVK QRFTAGPCSI SQQGAENMAA DHVAVDKVTE 480 IQDMSGSLYP CETSLVGCSN RKLYETKYGQ RDAAALCLST SEIQSRGIDT ARSHPAGGIL 540 DQGRLPCVQC GILSFACVAI IQPREAAVQF IMSKECISSS AKQGGIGASD DTSNWIDQSH 600 EISPPPGPAS GTDDNVKHAV SLVHVSDRCR ELYASNTDGC TSALGLLASA YDSSDSDDET 660 TEDVSKHSKK NDSVNQSTDP QILETSASCS STVQCQKTNS HLHEEECEAR ATSLMKPVSH 720 NSRPISQSNR DTDIDHFIEL GKSGTQCSGY LDLVDDLTTS VLKSSSDTCV SAAKASMDPD 780 VLTMLRYNKD SCRMHVFCLE HALETWTQLQ QIGGANIMLL CHPEYPRAES AAKVIAEELG 840 IKHDWKDITF KEATEEDVKK IQLALQDEDA EPTGSDWAVK MGINIYYSAK QSKSPLYSKQ 900 IPYNSIIYKA FGQENPDSLT DYGCQKSGST KKKVAGWWCG KVWMSNQVHP LLAREREEQN 960 SSVVYGKAMF TTISHGKVQD EASTRCNTSN RTPSRRTSRR KKGVSAEKSK PKNKRSTASD 1020 EASMLCSGLG MNSGVIHDQT ENSDDYDKHG NGDEIEEGTN PQKYQQRKLQ NVTRKSSSKK 1080 RKDEKRTDSF HELYDEDNGV DYWLNMGSGD DATLGNSRQQ SPDPVKVKSG GKLQGKRKSS 1140 KYKSNDDLLN EENKLQKMNK KSSSKKQKND KINRQLQEDQ TEDDHMDHLV DVVVADEVTL 1200 DNEDKITEDK IDDVKVKSRG KSQNGKRKGS KHQATDGLRA GNKVAKFPCD IEGCDMSFST 1260 QQDLLLHKRD ICPVKGCKKK FFCHKYLLQH RKVHIDERPL KCTWKGCKKA FKWPWARTEH 1320 MRVHTGVRPY ECQEPGCGQT FRFVSDFSRH KRKTGHSSDK RRKNST

Sequence ? help Back to Top

Protein Sequence Length: 1366 aa Download sequence

MSLQPPAVEP PEWLRTLPVA PEYHPTLAEF ADPIAYILRI EPEASRYGIC KIVPPLPRPP  60
EDDTFRRLQA AFAAAASSNG DPSPTFPTRL QQVGLSARNR RAASRRVWES GERYTLEAFR  120
AKAAEFEPPR HAAPPRNPTH LQLEALFWAA CASRPFSVEY GNDMPGSGFA SPDELPDAAN  180
ATDVGETEWN MRVAPRARGS LLRAMARDVA GVTTPMLYVA MLYSWFAWHV EDHELHSLNF  240
LHFGKAKTWY GVPRDAMLAF EETVRVHGYA DDLNAIMAFQ TLNEKTTVLS PEVLLSAGVP  300
CCRLVQKAGE FVITFPGAYH SGFSHGFNCG EASNIATPHW LQVAKEAAIR RASTNCGPMV  360
SHYQLLYELA LSLRPREPKN FYSVPRSSRL RDKNKNEGDI MVKENFVGSV TENNNLLSAL  420
LDKNSCIIVP NADFFIPSFP VALESEVTVK QRFTAGPCSI SQQGAENMAA DHVAVDKVTE  480
IQDMSGSLYP CETSLVGCSN RKLYETKYGQ RDAAALCLST SEIQSRGIDT ARSHPAGGIL  540
DQGRLPCVQC GILSFACVAI IQPREAAVQF IMSKECISSS AKQGGIGASD DTSNWIDQSH  600
EISPPPGPAS GTDDNVKHAV SLVHVSDRCR ELYASNTDGC TSALGLLASA YDSSDSDDET  660
TEDVSKHSKK NDSVNQSTDP QILETSASCS STVQCQKTNS HLHEEECEAR ATSLMKPVSH  720
NSRPISQSNR DTDIDHFIEL GKSGTQCSGY LDLVDDLTTS VLKSSSDTCV SAAKASMDPD  780
VLTMLRYNKD SCRMHVFCLE HALETWTQLQ QIGGANIMLL CHPEYPRAES AAKVIAEELG  840
IKHDWKDITF KEATEEDVKK IQLALQDEDA EPTGSDWAVK MGINIYYSAK QSKSPLYSKQ  900
IPYNSIIYKA FGQENPDSLT DYGCQKSGST KKKVAGWWCG KVWMSNQVHP LLAREREEQN  960
SSVVYGKAMF TTISHGKVQD EASTRCNTSN RTPSRRTSRR KKGVSAEKSK PKNKRSTASD  1020
EASMLCSGLG MNSGVIHDQT ENSDDYDKHG NGDEIEEGTN PQKYQQRKLQ NVTRKSSSKK  1080
RKDEKRTDSF HELYDEDNGV DYWLNMGSGD DATLGNSRQQ SPDPVKVKSG GKLQGKRKSS  1140
KYKSNDDLLN EENKLQKMNK KSSSKKQKND KINRQLQEDQ TEDDHMDHLV DVVVADEVTL  1200
DNEDKITEDK IDDVKVKSRG KSQNGKRKGS KHQATDGLRA GNKVAKFPCD IEGCDMSFST  1260
QQDLLLHKRD ICPVKGCKKK FFCHKYLLQH RKVHIDERPL KCTWKGCKKA FKWPWARTEH  1320
MRVHTGVRPY ECQEPGCGQT FRFVSDFSRH KRKTGHSSDK RRKNST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	1e-160	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA12G08260.1