PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA12G03860.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

GATA

Protein Properties

Length: 420aa MW: 44177.6 Da PI: 10.6933

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G03860.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	45.7	8.7e-15	157	189	1	33
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C nC + +Tp+WR+gp g +tLCnaCG++ r ONIVA12G03860.2 157 CLNCDAVETPQWRSGPMGRSTLCNACGVRLRAV 189 99**************************99865 PP
2	GATA	56.8	3.1e-18	285	319	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+t+Tp+WR+gp g tLCnaCG++yr +l ONIVA12G03860.2 285 CVHCGSTETPQWREGPTGRGTLCNACGVRYRQGRL 319 *******************************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MATVEGGIGE HFVAEQPPGL ARERRPRLRR SVAATGDMDG DGDVGGGGGG GGGGGVRYVL 60 ALPAMASLAV LIAHLDAAVP VPRRPRSYLP RAVPMAWWAF RLPVFRPPPP PPPPPAKNPV 120 KEEEGVARVV VVVAPPPPVD PGEEEAGKRA AKRARRCLNC DAVETPQWRS GPMGRSTLCN 180 ACGVRLRAVG SLPEHRAPAA RTTTAAPASP PDSPIWTPGH KPPSSSPDIY LVRRTPKLPV 240 TRPPRTKQAP PTAPAPAPPP PPPQPASPKT KTKAKAKKPK RKRSCVHCGS TETPQWREGP 300 TGRGTLCNAC GVRYRQGRLL PEYRPKGSPT FSPSVHAANH RQVLELRRQQ RQSTNPSTPP 360 PPPVSAAEPI PDEQKEEVVS VPVAAAAPAT DGGAASSLDA LLLDGPSAPL IVDGDDFLVS

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MATVEGGIGE HFVAEQPPGL ARERRPRLRR SVAATGDMDG DGDVGGGGGG GGGGGVRYVL  60
ALPAMASLAV LIAHLDAAVP VPRRPRSYLP RAVPMAWWAF RLPVFRPPPP PPPPPAKNPV  120
KEEEGVARVV VVVAPPPPVD PGEEEAGKRA AKRARRCLNC DAVETPQWRS GPMGRSTLCN  180
ACGVRLRAVG SLPEHRAPAA RTTTAAPASP PDSPIWTPGH KPPSSSPDIY LVRRTPKLPV  240
TRPPRTKQAP PTAPAPAPPP PPPQPASPKT KTKAKAKKPK RKRSCVHCGS TETPQWREGP  300
TGRGTLCNAC GVRYRQGRLL PEYRPKGSPT FSPSVHAANH RQVLELRRQQ RQSTNPSTPP  360
PPPVSAAEPI PDEQKEEVVS VPVAAAAPAT DGGAASSLDA LLLDGPSAPL IVDGDDFLVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08010.2	4e-23	GATA family protein

Link Out ? help Back to Top
Ensembl	ONIVA12G03860.2