PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA12G03860.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

GATA

Protein Properties

Length: 414aa MW: 43465.8 Da PI: 10.7694

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G03860.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	45.8	8.5e-15	151	183	1	33
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C nC + +Tp+WR+gp g +tLCnaCG++ r ONIVA12G03860.1 151 CLNCDAVETPQWRSGPMGRSTLCNACGVRLRAV 183 99**************************99865 PP
2	GATA	56.8	3e-18	279	313	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+t+Tp+WR+gp g tLCnaCG++yr +l ONIVA12G03860.1 279 CVHCGSTETPQWREGPTGRGTLCNACGVRYRQGRL 313 *******************************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MATVEGGIGE PPGLARERRP RLRRSVAATG DMDGDGDVGG GGGGGGGGGV RYVLALPAMA 60 SLAVLIAHLD AAVPVPRRPR SYLPRAVPMA WWAFRLPVFR PPPPPPPPPA KNPVKEEEGV 120 ARVVVVVAPP PPVDPGEEEA GKRAAKRARR CLNCDAVETP QWRSGPMGRS TLCNACGVRL 180 RAVGSLPEHR APAARTTTAA PASPPDSPIW TPGHKPPSSS PDIYLVRRTP KLPVTRPPRT 240 KQAPPTAPAP APPPPPPQPA SPKTKTKAKA KKPKRKRSCV HCGSTETPQW REGPTGRGTL 300 CNACGVRYRQ GRLLPEYRPK GSPTFSPSVH AANHRQVLEL RRQQRQSTNP STPPPPPVSA 360 AEPIPDEQKE EVVSVPVAAA APATDGGAAS SLDALLLDGP SAPLIVDGDD FLVS

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MATVEGGIGE PPGLARERRP RLRRSVAATG DMDGDGDVGG GGGGGGGGGV RYVLALPAMA  60
SLAVLIAHLD AAVPVPRRPR SYLPRAVPMA WWAFRLPVFR PPPPPPPPPA KNPVKEEEGV  120
ARVVVVVAPP PPVDPGEEEA GKRAAKRARR CLNCDAVETP QWRSGPMGRS TLCNACGVRL  180
RAVGSLPEHR APAARTTTAA PASPPDSPIW TPGHKPPSSS PDIYLVRRTP KLPVTRPPRT  240
KQAPPTAPAP APPPPPPQPA SPKTKTKAKA KKPKRKRSCV HCGSTETPQW REGPTGRGTL  300
CNACGVRYRQ GRLLPEYRPK GSPTFSPSVH AANHRQVLEL RRQQRQSTNP STPPPPPVSA  360
AEPIPDEQKE EVVSVPVAAA APATDGGAAS SLDALLLDGP SAPLIVDGDD FLVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08010.2	4e-23	GATA family protein

Link Out ? help Back to Top
Ensembl	ONIVA12G03860.1