PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA12G03460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRAS | ||||||||
Protein Properties | Length: 562aa MW: 61523.7 Da PI: 4.4417 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 169.4 | 2.8e-52 | 175 | 559 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlsel.aspdgd.......pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 +lLl+ A av++gd+ a+a+++rl +l a +g+ p+ la yf+++L+ r+++ +a p+s+ ++ + a+++++e++ ONIVA12G03460.1 175 DLLLAGAMAVDAGDAVHASAIMSRLDDLlADIAGRrsceatsPVDHLAYYFARGLKLRISG------AATPASSPPPPAANWSSPAYRMLQELT 262 689999*******************998766666456666679******************......3344444444445667789******** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa....sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 P++kf+h+taNqaIlea++ + vH++Df++++G+QW +L+ La R+++pp + +T v + + ++ ++ L++fAe+l++pf++ ONIVA12G03460.1 263 PFVKFAHFTANQAILEATADDLDVHVVDFNVGEGVQWSSLMSDLAaagrHRSSKPPLFHLTDVIT-SGAGTPRTADARRWLSEFAESLHLPFRY 355 ********************************************9664447799*******9999.4458999999999*************** PP GRAS 179 nvlvakrledl..eleeLrvkp....gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadh.nse..........sFl 254 + l++++ +d +eL++ ++ + ++ +++l+s + +L ++ l+Pk+v+++e e+++ +++ +F ONIVA12G03460.1 356 TSLHVHDGDDDdeLHHELAMICngssSPPVILTCDD--TTTTT-NTPLRSrLKLLLLGTITILQPKLVILIEDELSRiSKNppspslaappPFP 446 ***777555542222334332234323334444443..33332.3344441467889*****************999554489*********** PP GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348 e f++a+ +++a+++s+++ l + + ++++++ + +g+e vv + ++ + r +l+ +++e G+++ ++s + ++q k+l ++ g ONIVA12G03460.1 447 EFFSDAVAHFTAVMESTASCLVSYD-DEAWLSLRRVGEE---VVGSRVEDAVGRYGSLAGGAQMME--GLRAREVSGFSVAQGKMLAGLFG-GG 533 *****************88875544.3344443334554...466666666778888888889886..***********************.67 PP GRAS 349 yrve.eesgslvlgWkdrpLvsvSaW 373 + v +e+g l l+Wk+rpL+svS W ONIVA12G03460.1 534 FGVVhQEKGRLALCWKSRPLISVSLW 559 876638899999************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 562 aa Download sequence |
METMSYPCSL LIPFSTQFEE ISSSSLLLWS PQAEENPHEN ANMYEFDADH SHDQIHQDHQ 60 FLDMMVIQES ANEFDGNHSH DQIHQDHEFL ETMVIQESAN EFDGDHSHDQ IHQDHEFLEM 120 MAIQESANDL LQLQDDFSVP NADPLVASFE FDERLAVAGH ENGNVVAAQE ESAGDLLLAG 180 AMAVDAGDAV HASAIMSRLD DLLADIAGRR SCEATSPVDH LAYYFARGLK LRISGAATPA 240 SSPPPPAANW SSPAYRMLQE LTPFVKFAHF TANQAILEAT ADDLDVHVVD FNVGEGVQWS 300 SLMSDLAAAG RHRSSKPPLF HLTDVITSGA GTPRTADARR WLSEFAESLH LPFRYTSLHV 360 HDGDDDDELH HELAMICNGS SSPPVILTCD DTTTTTNTPL RSRLKLLLLG TITILQPKLV 420 ILIEDELSRI SKNPPSPSLA APPPFPEFFS DAVAHFTAVM ESTASCLVSY DDEAWLSLRR 480 VGEEVVGSRV EDAVGRYGSL AGGAQMMEGL RAREVSGFSV AQGKMLAGLF GGGFGVVHQE 540 KGRLALCWKS RPLISVSLWC PK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 2e-16 | GRAS family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA12G03460.1 |