PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA11G23290.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 245aa MW: 27177 Da PI: 7.2211

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA11G23290.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.5e-05	53	75	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H ONIVA11G23290.1 53 YTCSFCQREFRSAQALGGHMNVH 75 9********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MEEQRGEEEW VMWGSAGRRR IIRQSASWEE QAFARDAAAN ANLGGCVWPP RFYTCSFCQR 60 EFRSAQALGG HMNVHRRDRA RLRQRQTSSS SSPSHQEEEA EAPQDQQAGP YYTSFSKPST 120 TSTDNTTCSN DILLLARDQE TIKKRVPRQQ VQVVADQDED EPAGRRYKRR RLGLVDQLPS 180 SCEGGDHHHQ VLIITPTTAA ASPSSIIASA SALVVGDQQH QQAGSVLDLE LRLGTSTPPK 240 AVVHA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	17	24	GRRRIIRQ
2	168	172	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	1e-15	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA11G23290.1