PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G04040.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 532aa    MW: 58338.1 Da    PI: 4.552
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G04040.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS179.82e-551344692345
             GRAS   2 velLlecAeavssgdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                       +lLl+ Aeav++gd  la+ + +rl +       + +++++ Rla +f ++L++r+++ ++++y+   p++ +    s ++ ++++ +e+sP+
  ONIVA11G04040.1 134 SDLLLAGAEAVEAGDSILASVAFSRLDDFlsgipENGAASSFDRLAYHFDQGLRSRMSSASTGCYQ---PEPLP----SGNMLVHQIIQELSPF 220
                      679***********************998554333334479******************9899984...55554....456778899******* PP

             GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      +kf+h+t+NqaIl+a+ g+  vH++D++i++G+QW +L+  La    g   +R+T++   +  ++ +  ++ + L++fA++l++pf++n + ++
  ONIVA11G04040.1 221 VKFAHFTTNQAILDAIIGDMDVHVVDLNIGEGIQWSSLMSDLAR--CGGKFFRLTAITTYADCHASTHDTVVRLLSEFADSLELPFQYNSICVH 312
                      *******************************************7..4668*********887799999999999****************8777 PP

             GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.......adhnsesFlerflealeyysalfdsl 271
                      + ++l  +++  + + +++V++    ++    s+s+ +  + +L +vk+l+Pk+vv +e++       ++ +s+sF+e f+eal++++++f+s+
  ONIVA11G04040.1 313 NEDEL--HAFFEDCKGSVIVSCDTTSMYYK--SLSTLQ--SLLLVCVKKLQPKLVVTIEEDlvrigrgVSPSSASFVEFFFEALHHFTTVFESM 400
                      65555..777777799******99777775..554444..69*******************6555443444666******************** PP

             GRAS 272 eaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                      ++ +   s     + vE ellg++i++ v + g+ r+e +      +e l   GF + +ls  + +qa++l+  ++
  ONIVA11G04040.1 401 ASCFIGSSyePCLRLVEMELLGPRIQDFVVKYGSVRVEANA-----SEVL--EGFMACELSACNIAQARMLVGLFN 469
                      77776666578899*********************999888.....5555..59*****************99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    
MGPIIPEPHV SVTKSTVHFS PSISISPKQA GAGARLGSPP SPPPARTQPE QRTGRGMPPP  60
PRASVDSALH VDPCSDQQED LDLLDTMVLD SNELHQHDAP DVDVSINCDD RIFGQESVNL  120
AAIQEELLEE DSLSDLLLAG AEAVEAGDSI LASVAFSRLD DFLSGIPENG AASSFDRLAY  180
HFDQGLRSRM SSASTGCYQP EPLPSGNMLV HQIIQELSPF VKFAHFTTNQ AILDAIIGDM  240
DVHVVDLNIG EGIQWSSLMS DLARCGGKFF RLTAITTYAD CHASTHDTVV RLLSEFADSL  300
ELPFQYNSIC VHNEDELHAF FEDCKGSVIV SCDTTSMYYK SLSTLQSLLL VCVKKLQPKL  360
VVTIEEDLVR IGRGVSPSSA SFVEFFFEAL HHFTTVFESM ASCFIGSSYE PCLRLVEMEL  420
LGPRIQDFVV KYGSVRVEAN ASEVLEGFMA CELSACNIAQ ARMLVGLFNR PNKVIWSSLA  480
AGCGSHGIVV LAFYAADKLL EFKPKGIETY IHPAVERAHF HKEDRMWQEY EN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-29GRAS family protein