PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA09G06600.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LBD

Protein Properties

Length: 366aa MW: 38008 Da PI: 5.4726

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA09G06600.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.4	8.4e-37	76	175	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkC++dC+la+yfpa+++++f n+h+lFG+s+++k+l+++p+e + dam++l++eA+ara+dPv Ga++v+ +l +q+e l+ael ONIVA09G06600.1 76 ACAACKYQRRKCNADCPLARYFPADEQRRFLNAHHLFGVSKIQKTLRDTPPELHADAMQALTFEANARASDPVGGAARVVVELCRQYEMLHAEL 169 7******************************************************************************************* PP DUF260 95 allkee 100 a+++++ ONIVA09G06600.1 170 AAVQHH 175 *997 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MTASSSTTNS SSSVSTADTS SSNPPPQHAL HRQHIARSSA SSGGGGAAAP LPPRAPPRVG 60 VGGGGGGGGG VGQSQACAAC KYQRRKCNAD CPLARYFPAD EQRRFLNAHH LFGVSKIQKT 120 LRDTPPELHA DAMQALTFEA NARASDPVGG AARVVVELCR QYEMLHAELA AVQHHLKLCR 180 QQHAAAAAAA ANDQLVANVD PLADPAAEML FAGAVVPNQN DDAMVDAFYA DQQTAGDGDQ 240 EQYLVKDEAL AAQPPPQQPY EYLNYGTAGD EGSSHAWYTG NGGDADASPP MGLSDQLQQC 300 QIGAAPPFDV KPELPATMEH GGSVFVEQPE QKILPAAGSS SSAAAHCQLE LGCSSNAWKV 360 GTHVIN

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MTASSSTTNS SSSVSTADTS SSNPPPQHAL HRQHIARSSA SSGGGGAAAP LPPRAPPRVG  60
VGGGGGGGGG VGQSQACAAC KYQRRKCNAD CPLARYFPAD EQRRFLNAHH LFGVSKIQKT  120
LRDTPPELHA DAMQALTFEA NARASDPVGG AARVVVELCR QYEMLHAELA AVQHHLKLCR  180
QQHAAAAAAA ANDQLVANVD PLADPAAEML FAGAVVPNQN DDAMVDAFYA DQQTAGDGDQ  240
EQYLVKDEAL AAQPPPQQPY EYLNYGTAGD EGSSHAWYTG NGGDADASPP MGLSDQLQQC  300
QIGAAPPFDV KPELPATMEH GGSVFVEQPE QKILPAAGSS SSAAAHCQLE LGCSSNAWKV  360
GTHVIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72980.1	2e-29	LBD family protein

Link Out ? help Back to Top
Ensembl	ONIVA09G06600.1