PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G72980.1 | ||||||||
Common Name | ASL31, F3N23.18, LBD7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | LBD | ||||||||
Protein Properties | Length: 214aa MW: 24846.3 Da PI: 8.2061 | ||||||||
Description | LOB domain-containing protein 7 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.8 | 2.1e-39 | 13 | 113 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++r+kC+k+C+la+yfp++ ++kf n+hklFG+sn++k+lk+++e++r++am+ l+y+A+ara dPv G++++i +l+ ++e +++el+l++ AT1G72980.1 13 ACAACKHQRKKCKKNCILARYFPQDGTNKFLNAHKLFGVSNITKMLKRIEESQRDIAMENLIYHANARALDPVGGVYRTICDLKCKIEFVQTELNLTR 110 7************************************************************************************************9 PP DUF260 99 eel 101 +++ AT1G72980.1 111 QQI 113 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.935 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-35 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MSLSTFSGGS TTACAACKHQ RKKCKKNCIL ARYFPQDGTN KFLNAHKLFG VSNITKMLKR 60 IEESQRDIAM ENLIYHANAR ALDPVGGVYR TICDLKCKIE FVQTELNLTR QQIDMCRSLA 120 QEQHRQRQNL PYRCNSFESL LQQDGDEYVN VDGLDHQNMQ QQQEMQQQQQ NPSNYDMFLE 180 MPEQTSKVKL EEEKISDQRK NNLMRQILMS SAII |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-23 | 9 | 113 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-23 | 9 | 113 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 240254360 | 0.0 | ||||
Expression Atlas | AT1G72980 | - | ||||
AtGenExpress | AT1G72980 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G72980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G72980 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473864 | 0.0 | AB473864.1 Arabidopsis thaliana ASL31 mRNA for ASYMMETRIC LEAVES2-like 31 protein, complete cds. | |||
GenBank | AC008017 | 0.0 | AC008017.2 Arabidopsis thaliana chromosome I BAC F3N23 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_177441.1 | 1e-160 | LOB domain-containing protein 7 | ||||
Swissprot | Q9SSM9 | 1e-161 | LBD7_ARATH; LOB domain-containing protein 7 | ||||
TrEMBL | A0A178W3W0 | 1e-159 | A0A178W3W0_ARATH; LBD7 | ||||
STRING | AT1G72980.1 | 1e-159 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15466 | 14 | 17 | Representative plant | OGRP5524 | 10 | 21 |
Link Out ? help Back to Top | |
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Phytozome | AT1G72980.1 |
Entrez Gene | 843629 |
iHOP | AT1G72980 |
wikigenes | AT1G72980 |
Publications ? help Back to Top | |||
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