PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G18580.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 373aa MW: 39059.7 Da PI: 7.5728

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G18580.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.4	3.1e-07	205	227	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H ONIVA08G18580.1 205 HYCQVCGKGFKRDANLRMHMRAH 227 68*******************99 PP
2	zf-C2H2	12.9	0.00034	291	314	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ Cg k F s+L++H + + ONIVA08G18580.1 291 YVCGRCGgKQFAVLSDLRTHEKHC 314 9*******************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MNPQEFQFFQ GVEQEMLLLS HGGGGAAAAA SDDVLAYHVG VLRDKVQQLE PLVGMVVVSP 60 AAPHGQLRRD AAAMAASSAC SVLQEITAAA SAVAHRLEQA SAASSASFRR GVAFADDAHA 120 AGGEQMFAAG AHGGGQGGDD EAGASLFHHH GPPAVGAPTV FRAGATTTAA ASSSGGGDDD 180 GDGDGDGEVD VVELEASYLL ARYTHYCQVC GKGFKRDANL RMHMRAHGDE YKTAAALTST 240 GAGMRAAARR CSYSCPAEGC RWNRRHPRFQ ALKSVVCAKN HYRRSHCPKM YVCGRCGGKQ 300 FAVLSDLRTH EKHCGELRWL CSCGTFFSRK DKLMGHVALF AAGHAPVPVA PEASPSTTTT 360 GTTTDRSRTG LID

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MNPQEFQFFQ GVEQEMLLLS HGGGGAAAAA SDDVLAYHVG VLRDKVQQLE PLVGMVVVSP  60
AAPHGQLRRD AAAMAASSAC SVLQEITAAA SAVAHRLEQA SAASSASFRR GVAFADDAHA  120
AGGEQMFAAG AHGGGQGGDD EAGASLFHHH GPPAVGAPTV FRAGATTTAA ASSSGGGDDD  180
GDGDGDGEVD VVELEASYLL ARYTHYCQVC GKGFKRDANL RMHMRAHGDE YKTAAALTST  240
GAGMRAAARR CSYSCPAEGC RWNRRHPRFQ ALKSVVCAKN HYRRSHCPKM YVCGRCGGKQ  300
FAVLSDLRTH EKHCGELRWL CSCGTFFSRK DKLMGHVALF AAGHAPVPVA PEASPSTTTT  360
GTTTDRSRTG LID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	8e-79	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G18580.1