PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G09500.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 300aa MW: 30081.6 Da PI: 9.0292

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G09500.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	104	126	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C + F ++ L H++ H ONIVA08G09500.1 104 FKCNYCQRKFYTSQALGGHQNAH 126 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MASSSQTTVS MEVAMKVEGS GGGGGGGEEG EVVAKKEEEV AAAMELDLLG ALRAEEVMPA 60 EKGKAAVVMV GEAVAPSVEE RASAVAAAAA NGGGGGGEAR RRLFKCNYCQ RKFYTSQALG 120 GHQNAHKRER SLAKRGAAVA AAAAAAGRGL YGFGDPFVPH HLRFRSLWPY PAAAGAARTT 180 PFLGRGSAAA AAAAPAAPFY GAVHHGWSAQ PPSSLQGIAA RHAAAERPVY PADAFGYGAG 240 SSSSRATGAP ASAGLRWAEG GGSGTIHSAA AAAAGEQHTA AEVKAQEEMS SSKIDLTLKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	6e-17	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G09500.1