PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G05080.2
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 406aa    MW: 45800.1 Da    PI: 8.3697
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G05080.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.49.6e-1731111995
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      +   ++ +++pk+f+++ +g+   + +++le+++ +s +v++  +k+++++++t+GW +Fvk  +L+ gD+++F+++g+s+f   v 
  ONIVA08G05080.2  31 MGDFQHEMIIPKEFVQRLKGD--IPGEIQLETRNRNSHTVRV--DKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQF--DVI 111
                      5556788********999888..5558***************..*********************************99999..544 PP
2B342.11.5e-133194021099
                      HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +++ + l++ +++++++ ++   +kt++  ++ g +W+++l  + +sg   + +G ++F+++n++ +gD+++F+l ++++ +++v+++r+
  ONIVA08G05080.2 319 SGRISSLSIANRYVDNYLQD---EKTIR-LSRLGDKWNIRL--SDSSGNRRMVGGCRKFAEDNDVGVGDICLFELLKNHKCTMKVHIIRA 402
                      5566789*******888433...34788.56799*******..77777777889*********************9998888****9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    
MGTSCERCRR RDEQDYRNLD DSQKHFLLTM MGDFQHEMII PKEFVQRLKG DIPGEIQLET  60
RNRNSHTVRV DKTQEKVIFT EGWAQFVKTF DLQMGDSMMF RFNGNSQFDV IIVDQIGREK  120
ACSAVVDDSQ NPNVQERRVD ATETLNSSRA HSQPMPMQST TETVNHSHAR PCPMHTAVDC  180
MPLSHAHPQP MPMQFPTETV NHCHAPTGPM EMPLENVALS HAHARPLQMQ SQPTDRLTQV  240
QRGNSSKGNM TTMSSSSMSS GYSLSSKDQD CRVGVIPDPI IGQKTILSRV QVNVVKRKIQ  300
NIGSQIPIFV SVIGKNNASG RISSLSIANR YVDNYLQDEK TIRLSRLGDK WNIRLSDSSG  360
NRRMVGGCRK FAEDNDVGVG DICLFELLKN HKCTMKVHII RAKDIC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-13B3 family protein