PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA07G18980.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 219aa MW: 22010.7 Da PI: 8.3756

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA07G18980.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0014	136	158	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C ++F++ L H r+H ONIVA07G18980.1 136 HRCSICLRTFPSGQALGGHKRLH 158 79*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MALDGKPPVP PPSTPPMDSW ACGGRRSKRR GGGGGSSGSS GSSGGGGGGE SEEYLAACLL 60 MLAHGVRDEA EVVGVAAATA KPQHGYECSV CGKVYGSYQA LGGHKTSHRK PPSPAAEPAA 120 GEEPSSGGVA GEAKVHRCSI CLRTFPSGQA LGGHKRLHYE GGAVGDAVKE KNSLKTKAAV 180 ATAVLKDFDL NLPAAATTAG DEAESSPPEA KRARLLLLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49930.1	6e-28	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA07G18980.1