PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G17600.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 313aa    MW: 34806.2 Da    PI: 8.4647
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G17600.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.8e-06285307223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +Cp+C+k F+++ +L+ H  + H
  ONIVA07G17600.1 285 VCPKCSKAFRDPVLLVEHVERdH 307
                      7*****************99888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MGTPEFPNLG KHCSVGDCNQ IDFLPFTCDR CDHNCCFNKN EIDLRQNLKQ GLRMQWVFCL  60
QHRSYTSHQC PNANQKDVTV LICPLCAKGV RLNPNEDPNI TWDTHVNSDC DPSNYQKVTK  120
KKKCPVPGCR ETLTFSNTIR CKDCTKEHCL KHRFGPDHKC PGPRKPESTF PFGNMLRRSQ  180
KAESRSNSNS SSTSSSWWSS SLLTAATSFK SSAEAGMQKL STATTQAIQK AKDGISTSSS  240
NSGDLVEQCV QCPARFSTVG ALIEHCEKSH QSNLQSSRSR VTVDVCPKCS KAFRDPVLLV  300
EHVERDHGGT SRA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-113C2H2 family protein