PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G29160.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

SBP

Protein Properties

Length: 497aa MW: 53058.4 Da PI: 9.1569

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G29160.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.7	5.3e-41	202	278	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC++dls+a+eyhr+hkvCe+hskap+v+vsgle+rfCqqCsrfh l efD++k+sCrrrL++hn+rrrk+q+ ONIVA06G29160.2 202 CQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQ 278 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MANRWLLAGR STSTAVEILN SAMASFGMNW NQKSPVFWDW ENPAPFGPNT MENPKSIPHP 60 EPRGVVVAAA NHGSTNSSGG TFTSSSELAN GSSKSSLSAS FDSSSKLGNS LEFRFASVKG 120 HGKNMCKDGE AGRVEDSGTS PAVAVSHGEP VIGLKLGKRT YFENVCGGQN VKSSSAASGV 180 TCPSTVVKKV KVSQQSTQSS YCQVEGCKVD LSSAREYHRK HKVCEAHSKA PKVIVSGLER 240 RFCQQCSRFH GLAEFDQKKK SCRRRLSDHN ARRRKPQQEA ISFGSSRLAT MFYDARQQTD 300 IYFGQSPFGQ VRSNAISSCD NLGGFKFTEA KLPWMKPMKT IGLEDLNFST LQMPGNVVSH 360 TVHHHDFDGL IPFKGNTTKV LNQGVDPACA VVSSNSNGAP DLRRALSLLS SDSWGPADVQ 420 AGSQVHPGGV MPPLAVAAAT VTAPTNPVSV MHALHPSTGG GGFWQDGDDP PPLDHASQAQ 480 AFMHPGNGSS SGYGHLH

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MANRWLLAGR STSTAVEILN SAMASFGMNW NQKSPVFWDW ENPAPFGPNT MENPKSIPHP  60
EPRGVVVAAA NHGSTNSSGG TFTSSSELAN GSSKSSLSAS FDSSSKLGNS LEFRFASVKG  120
HGKNMCKDGE AGRVEDSGTS PAVAVSHGEP VIGLKLGKRT YFENVCGGQN VKSSSAASGV  180
TCPSTVVKKV KVSQQSTQSS YCQVEGCKVD LSSAREYHRK HKVCEAHSKA PKVIVSGLER  240
RFCQQCSRFH GLAEFDQKKK SCRRRLSDHN ARRRKPQQEA ISFGSSRLAT MFYDARQQTD  300
IYFGQSPFGQ VRSNAISSCD NLGGFKFTEA KLPWMKPMKT IGLEDLNFST LQMPGNVVSH  360
TVHHHDFDGL IPFKGNTTKV LNQGVDPACA VVSSNSNGAP DLRRALSLLS SDSWGPADVQ  420
AGSQVHPGGV MPPLAVAAAT VTAPTNPVSV MHALHPSTGG GGFWQDGDDP PPLDHASQAQ  480
AFMHPGNGSS SGYGHLH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	258	275	KKKSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	2e-47	SBP family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G29160.2