PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G28020.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 447aa MW: 47356.7 Da PI: 6.9096

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G28020.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.3	6.6e-17	28	75	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+llvd v+++G g+W+++ r+ g+ R++k+c++rw ++l ONIVA06G28020.1 28 KGPWTQAEDKLLVDHVRRHGEGNWNAVRRETGLQRCGKSCRLRWANHL 75 79******************************************9986 PP
2	Myb_DNA-binding	44.7	3.1e-14	81	124	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+++++E+ l+++++ +lG++ W++I++++ gRt++++k++w++ ONIVA06G28020.1 81 KGPFSPDEERLILRLHGLLGNK-WARISSYLH-GRTDNEIKNYWNT 124 79******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MARSGGGNGG GEGGGGGGNG GGGGGLKKGP WTQAEDKLLV DHVRRHGEGN WNAVRRETGL 60 QRCGKSCRLR WANHLRPDLR KGPFSPDEER LILRLHGLLG NKWARISSYL HGRTDNEIKN 120 YWNTRLKRRV RAGLTPYPPE IEREIAHLRA QNLNLSAEGG GGGMLPPPLL LDPSNPFALQ 180 QAPVVAPSPS ASQANSPPLI NQNYPLLNQM QGLQLLHLAN HQQAPPPQQQ QQQQPAFHHH 240 HDGGGGGGFV SSGLPPLPNR PRELPSNQFE TATSGGGGGG GCDALLESLL LGDDHVLPRP 300 NPAMLRVGSM PELMYREPSS SHVLHGGGGG GGASDSDVTS QYPPGEEDPH YGGRWDFIFE 360 DVKPKRKAAS AVEEISGMFG IAPGSIPGEW FNPGGVGSAA AAAGGSSAPS PGPSSVVTTD 420 DDFTLEMQQI MSSLPLLQPE EHHNWNA

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MARSGGGNGG GEGGGGGGNG GGGGGLKKGP WTQAEDKLLV DHVRRHGEGN WNAVRRETGL  60
QRCGKSCRLR WANHLRPDLR KGPFSPDEER LILRLHGLLG NKWARISSYL HGRTDNEIKN  120
YWNTRLKRRV RAGLTPYPPE IEREIAHLRA QNLNLSAEGG GGGMLPPPLL LDPSNPFALQ  180
QAPVVAPSPS ASQANSPPLI NQNYPLLNQM QGLQLLHLAN HQQAPPPQQQ QQQQPAFHHH  240
HDGGGGGGFV SSGLPPLPNR PRELPSNQFE TATSGGGGGG GCDALLESLL LGDDHVLPRP  300
NPAMLRVGSM PELMYREPSS SHVLHGGGGG GGASDSDVTS QYPPGEEDPH YGGRWDFIFE  360
DVKPKRKAAS AVEEISGMFG IAPGSIPGEW FNPGGVGSAA AAAGGSSAPS PGPSSVVTTD  420
DDFTLEMQQI MSSLPLLQPE EHHNWNA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	131	RLKRRVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	4e-57	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G28020.1