PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G19730.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 395aa MW: 41461.2 Da PI: 6.8364

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G19730.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.9	8.6e-14	136	186	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ah ++Er+RR+++N+ ++ Lr+l+P + k+ + a+i +v+YIk+Lq ONIVA06G19730.1 136 KTAHIAVERNRRKQMNENLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 186 689***********************9...9******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MGDALCDQLL LVDSDGGEFI PHHADADADD LFTILETWEG CANVVAGGAP ATTTTLGSPI 60 AAAACISGVV GGQNHQQLPE PAAAKTVPAT NNKRREEEVA DRDGDGDDDD GSPQKRHKCC 120 SPESSTTDVA AATTPKTAHI AVERNRRKQM NENLAVLRSL MPCFYVKRGD QASIIGGVVD 180 YIKELQQVLH SLEAKKQRKV YTDQVLSPRP PATVAASCCS PRPPPLSPRL PPQLLKSTPP 240 LSPRLAVPIS PRTPPTPGSP YRLLRLPPPP PPASGSNYAS PAMTPTHHET AAPSLDAIAA 300 ELSAYASRQA LGGGLLLPDV KVEFAGANLV LKTVSQRSPG QAVKIIAALE GRSLEILHAK 360 ISTVDDTAVN SFTVKVCTAS LLLHGTAISA LALIM

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MGDALCDQLL LVDSDGGEFI PHHADADADD LFTILETWEG CANVVAGGAP ATTTTLGSPI  60
AAAACISGVV GGQNHQQLPE PAAAKTVPAT NNKRREEEVA DRDGDGDDDD GSPQKRHKCC  120
SPESSTTDVA AATTPKTAHI AVERNRRKQM NENLAVLRSL MPCFYVKRGD QASIIGGVVD  180
YIKELQQVLH SLEAKKQRKV YTDQVLSPRP PATVAASCCS PRPPPLSPRL PPQLLKSTPP  240
LSPRLAVPIS PRTPPTPGSP YRLLRLPPPP PPASGSNYAS PAMTPTHHET AAPSLDAIAA  300
ELSAYASRQA LGGGLLLPDV KVEFAGANLV LKTVSQRSPG QAVKIIAALE GRSLEILHAK  360
ISTVDDTAVN SFTVKVCTAS LLLHGTAISA LALIM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53210.1	4e-35	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G19730.1