PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G04580.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

TCP

Protein Properties

Length: 408aa MW: 41017.1 Da PI: 9.8129

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G04580.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	129.7	2.9e-40	64	240	1	137
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 aa+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ ONIVA06G04580.1 64 AAPKRSSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSAPahlra 157 689*******************************************************************999878888888886666688888 PP TCP 89 ...............................kaaksaakskksqksaasalnlakesrakarar..are.rtrekmriknkln 137 ++++s + + +s + l+++ + +a a a +r+ r++++m+++++++ ONIVA06G04580.1 158 lpspaaaarfgsradawdrvvslgfpsegpaSSSSSPSPLLLNFHSGSVGLDVQPSPSAAAAAAdlSRKrRWEQEMQQQQQQQ 240 99999999999999999999999999999964444444888888888888888885555444444666667777777777665 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MDVAGDAGGG RRPNFPLQLL EKKEEQPCSS SAAGGGTGPS SAGGNGNNGS GPGGAGGEMQ 60 LRKAAPKRSS TKDRHTKVEG RGRRIRMPAL CAARVFQLTR ELGHKTDGET IEWLLQQAEP 120 AVIAATGTGT IPANFTSLNI SLRSSGSSLS APAHLRALPS PAAAARFGSR ADAWDRVVSL 180 GFPSEGPASS SSSPSPLLLN FHSGSVGLDV QPSPSAAAAA ADLSRKRRWE QEMQQQQQQQ 240 QQQQQQQQQQ YQQQMAGYTQ SQMPGTVWMV PSNSTQGGGP SGGGGGGGGG SGESIWTFPQ 300 MSSAAAAAAV YRGSVPSGLH FMNFPAPMAL LPGQQLGLGP VGGGGGGGGG GEGHMGILAA 360 LNAYRTQAAT DAAGQQGGGG GGGGSSQQQH GGGGGGGERH QSISTSDS

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MDVAGDAGGG RRPNFPLQLL EKKEEQPCSS SAAGGGTGPS SAGGNGNNGS GPGGAGGEMQ  60
LRKAAPKRSS TKDRHTKVEG RGRRIRMPAL CAARVFQLTR ELGHKTDGET IEWLLQQAEP  120
AVIAATGTGT IPANFTSLNI SLRSSGSSLS APAHLRALPS PAAAARFGSR ADAWDRVVSL  180
GFPSEGPASS SSSPSPLLLN FHSGSVGLDV QPSPSAAAAA ADLSRKRRWE QEMQQQQQQQ  240
QQQQQQQQQQ YQQQMAGYTQ SQMPGTVWMV PSNSTQGGGP SGGGGGGGGG SGESIWTFPQ  300
MSSAAAAAAV YRGSVPSGLH FMNFPAPMAL LPGQQLGLGP VGGGGGGGGG GEGHMGILAA  360
LNAYRTQAAT DAAGQQGGGG GGGGSSQQQH GGGGGGGERH QSISTSDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	1e-44	TCP family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G04580.1