PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G00530.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24406.9 Da    PI: 10.472
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G00530.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.19.6e-281968251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie++++rqvtfskRr+g+lKKA+ELSvLCdaeva+++fs++g+++ ++s
  ONIVA06G00530.1 19 RIEDTTRRQVTFSKRRKGLLKKASELSVLCDAEVALLVFSPRGRFFHFAS 68
                     8*********************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MAAAGGQQRR RGGRREMRRI EDTTRRQVTF SKRRKGLLKK ASELSVLCDA EVALLVFSPR  60
GRFFHFASAP SLEGTIDRYI SHTQEAPANK KPRELTVKNM KSQSETLAME IDTVEAYTRA  120
KTWNMLVART AWPGDADGEE PKQHPFTKGK QMQKKLMDKI SQLQQQEKIL SEENALLLDQ  180
GKVQHAPIGA PAREMNQNQH VQDIDVDTEL VIGRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-29MIKC_MADS family protein