PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G28880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 223aa MW: 25160.3 Da PI: 10.2501 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 41 | 3.2e-13 | 86 | 137 | 6 | 57 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++ q ++L e+++ n+ ++ ++++eLA++l+L +qV WF NrR + k+ ONIVA05G28880.1 86 RLSRVQSKQLDEFYRVNHAVDSKQKKELADRLNLRISQVDAWFRNRRLRSKQ 137 67899********************************************996 PP | |||||||
2 | HD-ZIP_I/II | 69.2 | 8.8e-23 | 83 | 169 | 2 | 89 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 ++rrls+ q+k+L+e ++ ++ +++++K+ela +L+l+ qv+ WF nrR R k+k +E+++++Lk+++++lk en+rL+ +ve+Lr+ ONIVA05G28880.1 83 NHRRLSRVQSKQLDEFYRVNHAVDSKQKKELADRLNLRISQVDAWFRNRRLRSKQKSTEMECAYLKECFNKLK-ENHRLQLQVEQLRS 169 579********************************************************************97.56789999999986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence |
MEPMGILKCP SSLKLSVAVP GHALNPFSDG GSGSGCNNNN TRELGIHLDL DRPYAREELP 60 QQGGSMEVQK GEERGSVRHN SSNHRRLSRV QSKQLDEFYR VNHAVDSKQK KELADRLNLR 120 ISQVDAWFRN RRLRSKQKST EMECAYLKEC FNKLKENHRL QLQVEQLRST SLQLQLQLQL 180 HSERVATAPT GQQAGTSAAA RIFTLPLSGY NPSRGTWFSP NAH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 8e-22 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA05G28880.1 |