PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G23630.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 699aa    MW: 75537.8 Da    PI: 6.7899
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G23630.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.41.2e-22133246199
                      EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                      f+k+lt sd++++g +++p++ ae++                  + +   s++l+  d++g +W++++iyr++++r++lt+GW++Fv+ ++L +
  ONIVA05G23630.1 133 FCKTLTASDTSTHGGFSVPRRAAEDCfpplvihlkeklvtfndyKTVR-PSQELIAVDLHGTQWKFRHIYRGQPRRHLLTTGWSSFVNRKKLVS 225
                      99******************************8888888887653332.5579***************************************** PP

                      T-EEEEEE-SSSEE..EEEEE-S CS
               B3  77 gDfvvFkldgrsefelvvkvfrk 99 
                      gD v+F   + ++++l+++v+r+
  ONIVA05G23630.1 226 GDAVLFL--RGDDGQLRLGVRRA 246
                      *******..34888899999986 PP
2Auxin_resp105.27.6e-35271351182
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                      +a+++++ksvF++++nPr+++seF+v++++++k+l++++s+GmRf++ +e+ed++er+ +G+++g+s++dp++Wp+S+W++L
  ONIVA05G23630.1 271 VASSLENKSVFHICFNPRSGASEFIVPYWRLLKSLNHPFSIGMRFRVCYESEDANERS-AGLISGISEVDPIKWPGSRWKCL 351
                      578899***************************************************9.9*********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    
MGIDLNTVEE EAEEGAAAAV CGELWHACAG PGVALPRRGS ALVYLPQAHL AADGGGGEVP  60
PAGAAAVPPH VACRVVGVEL RADAATDEVY ARLALVAEGE MLQRNFREGG GEDGAGEMEG  120
CDAEKKPRMP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP PLVIHLKEKL VTFNDYKTVR  180
PSQELIAVDL HGTQWKFRHI YRGQPRRHLL TTGWSSFVNR KKLVSGDAVL FLRGDDGQLR  240
LGVRRAVQLR NEALFEPVNS SDSKLRILSS VASSLENKSV FHICFNPRSG ASEFIVPYWR  300
LLKSLNHPFS IGMRFRVCYE SEDANERSAG LISGISEVDP IKWPGSRWKC LLVRWDDSTD  360
SSHQNRVSPW EIERVGGSVS VTHSLSSGSK RTKLHFPQGS LDTPFLNGNG HPDSMGTENF  420
HRVLQGQEFR GSRSHGVVCS ESPGVPNFQS PDNRRFSADM RGYMMPESGP PQRNTEFTYQ  480
PIGFSESLGF PEVLQGQEMS QVVPLFRGAT FGARTQNDRV VSANSVHRSA AQSGLLASTL  540
GHPISQFTLS SSKVSSPSSV LMFNQATAPN HETVSGTNNK GMHVSQFASQ EMLSETVTWP  600
GTQRQTPSEI TSNQFALARI PAPPSGAESG LPKRDAGRSS CRLFGFSLTG NMLGEDGEGL  660
DDGAIEAGCE NPPVLELFGH SHSTPGALHA LCAAAPLGM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-138ARF family protein