PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA05G08490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 210aa MW: 21437.4 Da PI: 6.1506 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 47 | 69 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H ONIVA05G08490.1 47 YECVFCKRGFTTAQALGGHMNIH 69 99*******************99 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence |
MDMDDGSSKG SRADESVSSL GTDDHAAAAE PMSSSPPPAT ATARPYYECV FCKRGFTTAQ 60 ALGGHMNIHR RDRAAKPAGP GAAAPPRDAS TTAVSRSVDC YSQFRHLAAA YPVPAATSGA 120 AGTAGSSSSF TMYYGGTGAG AEAAVVAGPR ELSLFDAGTD HGLHLGVGRR GGGGDGGESR 180 TPEGSEQQVA GELPERELDL ELRLGRHTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43540.1 | 2e-10 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | ONIVA05G08490.1 |