PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G22800.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 405aa    MW: 43781.9 Da    PI: 10.4144
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G22800.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000337193123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C  C + F++   L  H+++H
  ONIVA04G22800.1 71 YTCAFCRREFRSAQALGGHMNVH 93
                     9********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    
MAPTSSTEEV KHLTLHHLLK RQHRLKPAAV VWRWPTSVVP GGGAGRPPVP DEQLAADDVD  60
GLGGTWPPRS YTCAFCRREF RSAQALGGHM NVHRRDRAKM RGHGLHGAAG QQLGAAEAPA  120
AAAAARTEYA VALYPILNSG AGGAAVRIPG GDVLLSAPVA LAAARRGHDH RCIDLRRERS  180
RSTAPSSDVK QHCHDEHVRV VVRPRCAVLA VHLVDLLAVV AGVGAPPAEQ HEVVEDLGVL  240
VQAHDGEERV EDLDHLVDHL RPLLPLLVVG MVESSMPVMS MNSSSSPAAT NTNQMIMAKF  300
LGFLHQLTGG ADDGSSMVDM LLRTWCDADG GDGGVERRRA STANPGDMLL RRRLQILATT  360
RRRCWQRRRP PPPSRCGKSY RSSQGRRRDS PAHSPGRRSP SRRCG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-20C2H2 family protein