PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G24160.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 478aa MW: 51426.3 Da PI: 9.3626

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G24160.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00063	73	95	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F + L H ++H ONIVA03G24160.1 73 FRCTVCGKAFASYQALGGHKSSH 95 89**********99999999888 PP
2	zf-C2H2	13.8	0.00017	326	348	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F+++ L H +H ONIVA03G24160.1 326 FRCSVCGKAFPSHQALGGHKASH 348 89*************99998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MTAALQALLD PTALSLGLPT PAINKEEYLA ICLAALACTR AGKALVGVGG QQQVQACNKW 60 LCPAPAAPEE LRFRCTVCGK AFASYQALGG HKSSHRKPPS PGDHYGAAAA AQQLASAGDS 120 KEDSASSAAG STGPHRCTIC RRSFATGQAL GGHKRCHYWD GTSVSVSVSA SASAASSAVR 180 NFDLNLMPLP ESTAAAGIKR WAEEEEVQSP LPVKKLRINR VLEYLEQRND LILNNVQVNF 240 VKWKANFKEE FSQHKHRVKE LDKPFWQSWI HNLSVHAHHT KMVTNMTHDD PRFMALAQAG 300 VGGQWPAQKQ QIDMAPPAPE RELLRFRCSV CGKAFPSHQA LGGHKASHRK PPTAALPMHV 360 IDAPPPPSAE DTASSSTTTT TSGGGRHRCS VCHRTFATGQ ALGGHKRCHY WDGLSVVSVT 420 ASASGSGSSS VRNFDLNLKP VPETVAAGVR RWGEEEEVQS PLPFKKRRLS SPSLELNL

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MTAALQALLD PTALSLGLPT PAINKEEYLA ICLAALACTR AGKALVGVGG QQQVQACNKW  60
LCPAPAAPEE LRFRCTVCGK AFASYQALGG HKSSHRKPPS PGDHYGAAAA AQQLASAGDS  120
KEDSASSAAG STGPHRCTIC RRSFATGQAL GGHKRCHYWD GTSVSVSVSA SASAASSAVR  180
NFDLNLMPLP ESTAAAGIKR WAEEEEVQSP LPVKKLRINR VLEYLEQRND LILNNVQVNF  240
VKWKANFKEE FSQHKHRVKE LDKPFWQSWI HNLSVHAHHT KMVTNMTHDD PRFMALAQAG  300
VGGQWPAQKQ QIDMAPPAPE RELLRFRCSV CGKAFPSHQA LGGHKASHRK PPTAALPMHV  360
IDAPPPPSAE DTASSSTTTT TSGGGRHRCS VCHRTFATGQ ALGGHKRCHY WDGLSVVSVT  420
ASASGSGSSS VRNFDLNLKP VPETVAAGVR RWGEEEEVQS PLPFKKRRLS SPSLELNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	3e-27	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G24160.1