PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G24000.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 603aa    MW: 64215.8 Da    PI: 6.3708
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G24000.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.54e-921896022374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfs 94 
                       +lL+ecA+av+ +d +++q+l++ l+elasp+gd  q+la+yf+++L arl+ s++++ ++l++ ++++  s +++  + l f+e+sP+  f+
  ONIVA03G24000.1 189 AQLLMECARAVAGRDSQRVQQLMWMLNELASPYGDVDQKLASYFLQGLFARLTTSGPRTLRTLATASDRNA-SFDSTRRTALkFQELSPWTPFG 281
                      589************************************************************99988744.44444444446*********** PP

             GRAS  95 hltaNqaIleavege...................ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg...skeeleetgerL 165
                      h++aN aIle++ ++                   +r+Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v++ ++     ++ ++e+g+rL
  ONIVA03G24000.1 282 HVAANGAILESFLEAaaagaaaasssssssstppTRLHILDLSNTFCTQWPTLLEALATRSsDDTPHLSITTVVPTAAPsaaAQRVMREIGQRL 375
                      **********986655666677777888888888899************************8889********996655788999********* PP

             GRAS 166 akfAeelgvpfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse.... 251
                      +kfA+ +gvpf+f+++++  +l+dl+l +L++++     alaVn+v +l  +          rd+++  +++l+P+vv+vve+ead+ ++    
  ONIVA03G24000.1 376 EKFARLMGVPFSFRAVHHAgDLADLDLAALDLREggaTAALAVNCVNALRGVA-------RGRDAFVASLRRLEPRVVTVVEEEADLAAPeada 462
                      ***************97767**************8877899********9998.......5589********************9997767899 PP

             GRAS 252 ........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                               F++ f e l+++sa +dsle+++p++s+er ++Er+ +gr+iv++v+c  +++ er+et+++W +r+++aGF+p+++se++a+++
  ONIVA03G24000.1 463 sseadtdaAFVKVFGEGLRFFSAYMDSLEESFPKTSNERLSLERA-VGRAIVDLVSCPASQSAERRETAASWARRMRSAGFSPAAFSEDVADDV 555
                      99999999*************************************.************************************************ PP

             GRAS 338 klllrkvksdgyrveee...........sgslvlgWkdrpLvsvSaWr 374
                      ++llr++k +g+++ +             + ++l Wk++p+v++SaW+
  ONIVA03G24000.1 556 RSLLRRYK-EGWSMRDAggatddaagaaAAGAFLAWKEQPVVWASAWK 602
                      ********.888988555556667777688899**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    
MDTLFRLVSL HHHHHHQHAA SPSPPDQPHK SYPSSRGSTS SPSSHHTHNH TYYHHSHSHY  60
NNNSNTNYYY QGGGGGGGGY YYAEEQQPAA YLEECGNGHQ FYMDEDFSSS SSSRQFHSGT  120
GAPSSAPVPP PPSATTSSAG GHGLFEAADF SFPQVDISLD FGGSPAVPSS SGAGAGAGAA  180
PSSSGRWAAQ LLMECARAVA GRDSQRVQQL MWMLNELASP YGDVDQKLAS YFLQGLFARL  240
TTSGPRTLRT LATASDRNAS FDSTRRTALK FQELSPWTPF GHVAANGAIL ESFLEAAAAG  300
AAAASSSSSS SSTPPTRLHI LDLSNTFCTQ WPTLLEALAT RSSDDTPHLS ITTVVPTAAP  360
SAAAQRVMRE IGQRLEKFAR LMGVPFSFRA VHHAGDLADL DLAALDLREG GATAALAVNC  420
VNALRGVARG RDAFVASLRR LEPRVVTVVE EEADLAAPEA DASSEADTDA AFVKVFGEGL  480
RFFSAYMDSL EESFPKTSNE RLSLERAVGR AIVDLVSCPA SQSAERRETA ASWARRMRSA  540
GFSPAAFSED VADDVRSLLR RYKEGWSMRD AGGATDDAAG AAAAGAFLAW KEQPVVWASA  600
WKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-132GRAS family protein