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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | ONIVA03G15280.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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| Family | MYB | ||||||||
| Protein Properties | Length: 331aa MW: 35535.3 Da PI: 4.6904 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 56.2 | 8.1e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rgrWTteEde+l+ +++++G g+W++ ++ g+ R++k+c++rw +yl
ONIVA03G15280.1 14 RGRWTTEEDEKLAGYIAKHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
8*******************************99************97 PP
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| 2 | Myb_DNA-binding | 49.1 | 1.3e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+ + +E++ ++++++ lG++ W++Ia++++ gRt++++k++w+++l
ONIVA03G15280.1 67 RGNISNQEEDVIIKLHATLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112
788999****************.*********.************986 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 331 aa Download sequence |
MGRAPCCEKV GLKRGRWTTE EDEKLAGYIA KHGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRAGVKRGNI SNQEEDVIIK LHATLGNRWS LIASHLPGRT DNEIKNYWNS HLSRQIHTYR 120 RTYTAPSEAA VTIDVTKLQA AGKRRGGRTA GQSRKGDKKR AEDDPPKETA AADTPLPESS 180 PRRAQSDEAR SGSVVVDPEE PSSQPNNGSS GGGGGTPDGP CSEETATGPT SLDPMEMGLW 240 EAESEFAEME ALLCGGVAPD GPGIPGLEPL DVAAQADDLL DMDWDGFAAD LWGDPAQRGG 300 LVQDAGEPND SMGCSSDELE SFASWLLSDS C |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT2G47460.1 | 2e-68 | MYB family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | ONIVA03G15280.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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