PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G13290.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 439aa MW: 46023.6 Da PI: 7.5731

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G13290.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.1	4.3e-05	331	368	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYIk L ONIVA03G13290.1 331 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 368 677888999*****998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MGDHQMMHAA PAAMYNGGGG GGTTSSHGVW WSNAVGVPAA ATCSTTTELA GYTAWSSALA 60 AGYDGMVADN GGKQAKSTTT ASSESPGNNS SVTFQEPASI PDPAAVAAVP QPGLAGFTDW 120 TQPFMNNGAG LHEFLQDGHH DMSASSLMNH SSNNLALQQA GHHHELLSSF GSDLLLSPTS 180 PYGGFQSSLL RSLMEPTAKQ QQQQPALAGL QQYHQYQQQM GHTPTAAAKF AQAVGARDSL 240 QFTNDAPFWN PSAGFGMPAA VAVAAAAVQD QASVRSAKRS SPAPPRAAAT LALKTAMEGV 300 GDSSSVITKK ETAFKKPRLE TPSPLPTFKV RKEKLGDRIT ALQQLVSPFG KTDTASVLHE 360 TIEYIKFLHD QVGALSAPYL KNGAHQVPHL KNSSPDKSKH GEIPLKGRGL CLVPISSTFA 420 VASEVPVELW TPFGANFIR

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MGDHQMMHAA PAAMYNGGGG GGTTSSHGVW WSNAVGVPAA ATCSTTTELA GYTAWSSALA  60
AGYDGMVADN GGKQAKSTTT ASSESPGNNS SVTFQEPASI PDPAAVAAVP QPGLAGFTDW  120
TQPFMNNGAG LHEFLQDGHH DMSASSLMNH SSNNLALQQA GHHHELLSSF GSDLLLSPTS  180
PYGGFQSSLL RSLMEPTAKQ QQQQPALAGL QQYHQYQQQM GHTPTAAAKF AQAVGARDSL  240
QFTNDAPFWN PSAGFGMPAA VAVAAAAVQD QASVRSAKRS SPAPPRAAAT LALKTAMEGV  300
GDSSSVITKK ETAFKKPRLE TPSPLPTFKV RKEKLGDRIT ALQQLVSPFG KTDTASVLHE  360
TIEYIKFLHD QVGALSAPYL KNGAHQVPHL KNSSPDKSKH GEIPLKGRGL CLVPISSTFA  420
VASEVPVELW TPFGANFIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	2e-48	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G13290.1