PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G12790.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 454aa MW: 48350 Da PI: 8.708

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G12790.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.5e-05	209	232	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg++ s + +L+ H+ + H ONIVA03G12790.1 209 FPCKVCGEVLSKPQQLELHQAMkH 232 89******************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MAGGGRCSSL LRGFVSLFFL LFIHIGHAGC CFSTGSSTQT LEEDDTGHGA DGRGGGGGGS 60 KRRKISPLAF SPSVSSSTVA DERSRARRRQ VSSLATSVRF YLHRIFSYSS GAKNGAGAPA 120 AEEEDEAVTT TVSSPLAQSS SCLPQRQASS SVVLSTPSSP CASPFLSPLS PQSLSITPAV 180 PSSPHNRQIP QATTRQSSFR SFAARGDVFP CKVCGEVLSK PQQLELHQAM KHSLSELSSL 240 DSSMNIIRMI FLAGWKPAVM PGAGEPPSVR RILRIHHNPR VLTRFEEYRD LVRARAARRC 300 AGAGAAAVEE RCVADGNERL RFYCSTMLCT LGAGVCGSPY CCTCSILRHG FAGKQADVDG 360 IATYSSGRAA HASLPDDVER EFAFLQVRRA MLVCRVVAGR VGRGAADDKV AYDSMVPLLP 420 TSSFAAATRG DDDVELLVFN PRAVLPCFVI IYSC

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MAGGGRCSSL LRGFVSLFFL LFIHIGHAGC CFSTGSSTQT LEEDDTGHGA DGRGGGGGGS  60
KRRKISPLAF SPSVSSSTVA DERSRARRRQ VSSLATSVRF YLHRIFSYSS GAKNGAGAPA  120
AEEEDEAVTT TVSSPLAQSS SCLPQRQASS SVVLSTPSSP CASPFLSPLS PQSLSITPAV  180
PSSPHNRQIP QATTRQSSFR SFAARGDVFP CKVCGEVLSK PQQLELHQAM KHSLSELSSL  240
DSSMNIIRMI FLAGWKPAVM PGAGEPPSVR RILRIHHNPR VLTRFEEYRD LVRARAARRC  300
AGAGAAAVEE RCVADGNERL RFYCSTMLCT LGAGVCGSPY CCTCSILRHG FAGKQADVDG  360
IATYSSGRAA HASLPDDVER EFAFLQVRRA MLVCRVVAGR VGRGAADDKV AYDSMVPLLP  420
TSSFAAATRG DDDVELLVFN PRAVLPCFVI IYSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-51	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G12790.1