PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G12680.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 579aa    MW: 61186.6 Da    PI: 4.9153
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G12680.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.66.4e-911325291373
             GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdgd......pmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfs 85 
                      l +lL+++Aea+s   ++ ela+ +L rl+e++s ++       +m+Rlaa+ft AL+  l +s +   +  ++ ++++++   ++l+a+++++
  ONIVA03G12680.1 132 LLHLLMAAAEALSGphKSRELARVILVRLKEMVSHTAGanaaatNMERLAAHFTDALQGLLDGSHPVGGSGRQAAAAASHHhAGDVLTAFQMLQ 225
                      579**********8557777************6655433455559******************888777766555554444499********** PP

             GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                      ++sP++kf+h+taNqaIleav+g++rvHi+D+di +G+QW++L+qa++sR+   ++p+lRiT+v+++  g +++++e g+rL+ fA+++g pf+
  ONIVA03G12680.1 226 DMSPYMKFGHFTANQAILEAVSGDRRVHIVDYDIAEGIQWASLMQAMTSRAdgVPAPHLRITAVSRSGGGGARAVQEAGRRLSAFAASIGQPFS 319
                      ***************************************************666789*********7777************************ PP

             GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnse................sFl 254
                      f     ++ e +++ + r+ +gEal+ n+vl+                 ++L+ +  l +k+v+vve+e + ++                  F+
  ONIVA03G12680.1 320 FGQCRLDSDERFRPATVRMVKGEALVANCVLHQAAATTTIRRP-TgSVASFLSGMAALGAKLVTVVEEEGEAEKDddgdsagdaaaaaaagGFV 412
                      ***9999***********************9655554333333.247889*******************98866568999************** PP

             GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348
                      +rf+e l+ ysa+ dslea++p++s+ r  vEr++l+++i  +v+ + +    + e    W ++++ +GF++vpls ++ +qa+lll  ++ dg
  ONIVA03G12680.1 413 RRFMEELHRYSAVWDSLEAGFPTQSRVRGLVERVILAPNIAGAVSRAYRG--VDGEGRCGWGQWMRGSGFTAVPLSCFNHSQARLLLGLFN-DG 503
                      *********************************************99887..88899999*******************************.** PP

             GRAS 349 yrveee.sgslvlgWkdrpLvsvSaW 373
                      y+vee   + +vlgWk r+L+s+S+W
  ONIVA03G12680.1 504 YTVEETgPNKIVLGWKARRLMSASVW 529
                      ****99457788************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    
MEVTMEDVAG DFEFSGCGST TTTSSASSLD DGTGMCYAWG ELSPVADWAN FCCSDDDGGH  60
DLHGLIESML CDDTLVVVDD DGQAGLHHAD MFRDDLYCYG NGSNPSSTTT TNPGSPVFDD  120
PTQGCPEKGL RLLHLLMAAA EALSGPHKSR ELARVILVRL KEMVSHTAGA NAAATNMERL  180
AAHFTDALQG LLDGSHPVGG SGRQAAAAAS HHHAGDVLTA FQMLQDMSPY MKFGHFTANQ  240
AILEAVSGDR RVHIVDYDIA EGIQWASLMQ AMTSRADGVP APHLRITAVS RSGGGGARAV  300
QEAGRRLSAF AASIGQPFSF GQCRLDSDER FRPATVRMVK GEALVANCVL HQAAATTTIR  360
RPTGSVASFL SGMAALGAKL VTVVEEEGEA EKDDDGDSAG DAAAAAAAGG FVRRFMEELH  420
RYSAVWDSLE AGFPTQSRVR GLVERVILAP NIAGAVSRAY RGVDGEGRCG WGQWMRGSGF  480
TAVPLSCFNH SQARLLLGLF NDGYTVEETG PNKIVLGWKA RRLMSASVWA PPPLPVPSSP  540
PEGVCQPVVG MAPVATGGFA RTEFDYIDSF LVEPAYALV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-98GRAS family protein