PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G12000.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

M-type_MADS

Protein Properties

Length: 482aa MW: 53404.4 Da PI: 4.9022

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G12000.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	36.6	5.8e-12	137	172	3	38
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevavi 38 ie+++ r+ t+skRr g++K A+ LS L+da va+ ONIVA03G12000.1 137 IEEDRDRSLTLSKRRDGLFKLANDLSLLTDASVAIC 172 99*******************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MESQICQFGT FLEVNNQHSA TPKGKTIPVK CTDCLPGVAS RSLTVIPLEV PHDVLLSARE 60 AKTQYNSTFE HNLSETNFVT GTDNGAHHAN VKDVPPDIYE TEFRHQFPRI ETSFSIIGAH 120 FLSSMVRRGR RKGVRYIEED RDRSLTLSKR RDGLFKLAND LSLLTDASVA ICLHDSNKAQ 180 FFGAPSVKPV VDAFVSEAEP FADEQLKAKL TSMQSELVQL ENEEEEKDKK TEESIQRFKE 240 AQEESLGMGM AKHLFSRLED LSHDDMRELL DVLLPLQQDF KKRLPPLRRG SKLQIGGSSA 300 WAHQQPSCSR FLASHRPFTP LLPGGTSGVP MIPPPPVPGS PWSQIFPLRP PLFPSPELVP 360 SQQLPPVSPP QNTVAPPPMH APLVQQPLTN QSSAVPLLTQ WQMRFGDQPP AEVQACTPVE 420 QPQNDNAVHT PTFSDSFLLE LLADVSDDGI ATAEPLCSPP IDDQFLADID WLAELDTIDG 480 NL

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MESQICQFGT FLEVNNQHSA TPKGKTIPVK CTDCLPGVAS RSLTVIPLEV PHDVLLSARE  60
AKTQYNSTFE HNLSETNFVT GTDNGAHHAN VKDVPPDIYE TEFRHQFPRI ETSFSIIGAH  120
FLSSMVRRGR RKGVRYIEED RDRSLTLSKR RDGLFKLAND LSLLTDASVA ICLHDSNKAQ  180
FFGAPSVKPV VDAFVSEAEP FADEQLKAKL TSMQSELVQL ENEEEEKDKK TEESIQRFKE  240
AQEESLGMGM AKHLFSRLED LSHDDMRELL DVLLPLQQDF KKRLPPLRRG SKLQIGGSSA  300
WAHQQPSCSR FLASHRPFTP LLPGGTSGVP MIPPPPVPGS PWSQIFPLRP PLFPSPELVP  360
SQQLPPVSPP QNTVAPPPMH APLVQQPLTN QSSAVPLLTQ WQMRFGDQPP AEVQACTPVE  420
QPQNDNAVHT PTFSDSFLLE LLADVSDDGI ATAEPLCSPP IDDQFLADID WLAELDTIDG  480
NL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29962.1	7e-09	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G12000.1