PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G06800.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 543aa MW: 55410.4 Da PI: 8.0593

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G06800.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	129	151	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ ONIVA03G06800.1 129 WKCDKCSKKYAVQSDWKAHTKTC 151 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MEVETSSGTA ERGAGAGAQQ QPPPQPQPQP PAKKKRALPG MPDPDAEVIA LSPKTLLATN 60 RFVCEICNKG ATRTCSCTGA GTTCRGSCGS GAGRRCGSGC TCAHDPSRAL GDLTGIKKHF 120 CRKHGEKKWK CDKCSKKYAV QSDWKAHTKT CGSREYRCDC GTLFSRRDSF ITHRAFCDAL 180 AEESAKARAA PPPPADEDGT SASAGAPPPQ APLPPPAPVP APAPPPPPAA APAPAAQPEQ 240 RDRDAALDQF ATPAPAPAPP PVTAPPPPPV AAPNDCVSSS SSGVAPTSQS LLSSMFAPPS 300 VAQAPQYADP IGVGAGGHQE RAVPAKPPAL CLAPNASSSL FTAPVPADRQ QFAPPPPPSP 360 SPHMSATALL QKAAQMGATS SSSSFLRCLG LDMSSSSSAP PSSSGQQQQH HHHHHQETMQ 420 VPLPASSLPE WPPRLQPEPS PMLSSGLGLG LPYDATGGPV SLPELMMGQS TLFSAKPATL 480 DFLGLGVSPT GASTSRGFPT FIQPIGGAVS LAGSATVAAE TFGAANGGQA NPWERNPSSS 540 PIL

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MEVETSSGTA ERGAGAGAQQ QPPPQPQPQP PAKKKRALPG MPDPDAEVIA LSPKTLLATN  60
RFVCEICNKG ATRTCSCTGA GTTCRGSCGS GAGRRCGSGC TCAHDPSRAL GDLTGIKKHF  120
CRKHGEKKWK CDKCSKKYAV QSDWKAHTKT CGSREYRCDC GTLFSRRDSF ITHRAFCDAL  180
AEESAKARAA PPPPADEDGT SASAGAPPPQ APLPPPAPVP APAPPPPPAA APAPAAQPEQ  240
RDRDAALDQF ATPAPAPAPP PVTAPPPPPV AAPNDCVSSS SSGVAPTSQS LLSSMFAPPS  300
VAQAPQYADP IGVGAGGHQE RAVPAKPPAL CLAPNASSSL FTAPVPADRQ QFAPPPPPSP  360
SPHMSATALL QKAAQMGATS SSSSFLRCLG LDMSSSSSAP PSSSGQQQQH HHHHHQETMQ  420
VPLPASSLPE WPPRLQPEPS PMLSSGLGLG LPYDATGGPV SLPELMMGQS TLFSAKPATL  480
DFLGLGVSPT GASTSRGFPT FIQPIGGAVS LAGSATVAAE TFGAANGGQA NPWERNPSSS  540
PIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	5e-56	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G06800.1