PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G06070.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 307aa    MW: 33923.8 Da    PI: 5.4227
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G06070.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-18101151155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GVr+++ +gr++AeIrdp++    +r++lg++g+aeeAa a+++ +++++g
  ONIVA03G06070.1 101 SKYRGVRRRP-SGRFAAEIRDPKK---GRRVWLGTYGSAEEAAVAYDREARRIRG 151
                      89********.7*********954...4************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MCGGAILADF TPARVPRRLT AAELLPVTPT PPAAERRTTR KRKSDVDFEA EFELFEDDDD  60
DDEFELSDDG DEISSDVSSS SRPRRRVAAA AAGRRKASKK SKYRGVRRRP SGRFAAEIRD  120
PKKGRRVWLG TYGSAEEAAV AYDREARRIR GKGARLNFPR DGDGSPRRSN DRPCWTIDLN  180
LPAAAVSGDD DDAMAVDAAD ADAGSAGRAA AYADQEALSA AKCKIKQCPR DEQMASATPE  240
LMEEDASSSR NMVPLSMALQ LQYAAMIAEC DREMEEIAAV ERDLERRRRQ VFERRGHLVR  300
QASLLLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13944TRKRKS
294110RRKASKKSKYRGVRRRP
395111RRKASKKSKYRGVRRRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-24ERF family protein