PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G03550.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 651aa MW: 69578.7 Da PI: 5.3218

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G03550.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.7e-05	540	565	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ +C ++F+++ +L +H ++ + ONIVA03G03550.1 540 FQCEidYCRMTFKNRAELSVHKKNtC 565 89*******************99866 PP
2	zf-C2H2	12.4	0.00048	565	587	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cg++F+++ +L+rH++ H ONIVA03G03550.1 565 CTvkSCGRHFRSHKYLRRHQSIH 587 88889***************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 651 aa Download sequence
MRIRRYAARL LASSTATAPS SLPPPPAASA AWCHAAADDC AICDLTRSAS PQVVAPDAIK 60 QKGHIAGRAP EPELRSDPRV GLAERTPVPE DQGRDIDDGP PAKRSLTFTD AAARLEGSGN 120 VGAGVATEPA ARVGAPVANG AVSGQEDRAA TCLADESAAE LIATRVTSLV TGATAEPEVL 180 KGASFANTNV TEPRVLERVP LVREAATEPE AEVSMREVTE GALPDGEGAA KLEITGGLSR 240 ESADKMEVTK GISLVTEASA DSELAQRVPT EPGVELSLPE VTERVPVVTE DFTELGDTFS 300 GLHITGFASL DNEGSVEQEV TGSGSLVNEA TEMEVKEGTC IFTRVATELG DTGRVSACSG 360 DGDIALDEPQ PPDCVSEVAN VNVGNAGEAV ASKVQPFRDN AESVGGSINS TGNGHVSSKS 420 PTADEAAPPG GCTDTPSVSC LSDIVARSIG KSGRTDIICY VRRRGKRKLE MVEVKEENVE 480 MDDSAICDQY DDKVASERTG PCESVTSTAV SVEIKIADIK RELEDNSTAS KGKKKRAKRF 540 QCEIDYCRMT FKNRAELSVH KKNTCTVKSC GRHFRSHKYL RRHQSIHNDD MPYKCPWEGC 600 SMAFKWSWDR GEHFQVHAGK RPYKCTTPGC SKIYKFVSDF TRHKRRCKPQ R

Sequence ? help Back to Top

Protein Sequence Length: 651 aa Download sequence

MRIRRYAARL LASSTATAPS SLPPPPAASA AWCHAAADDC AICDLTRSAS PQVVAPDAIK  60
QKGHIAGRAP EPELRSDPRV GLAERTPVPE DQGRDIDDGP PAKRSLTFTD AAARLEGSGN  120
VGAGVATEPA ARVGAPVANG AVSGQEDRAA TCLADESAAE LIATRVTSLV TGATAEPEVL  180
KGASFANTNV TEPRVLERVP LVREAATEPE AEVSMREVTE GALPDGEGAA KLEITGGLSR  240
ESADKMEVTK GISLVTEASA DSELAQRVPT EPGVELSLPE VTERVPVVTE DFTELGDTFS  300
GLHITGFASL DNEGSVEQEV TGSGSLVNEA TEMEVKEGTC IFTRVATELG DTGRVSACSG  360
DGDIALDEPQ PPDCVSEVAN VNVGNAGEAV ASKVQPFRDN AESVGGSINS TGNGHVSSKS  420
PTADEAAPPG GCTDTPSVSC LSDIVARSIG KSGRTDIICY VRRRGKRKLE MVEVKEENVE  480
MDDSAICDQY DDKVASERTG PCESVTSTAV SVEIKIADIK RELEDNSTAS KGKKKRAKRF  540
QCEIDYCRMT FKNRAELSVH KKNTCTVKSC GRHFRSHKYL RRHQSIHNDD MPYKCPWEGC  600
SMAFKWSWDR GEHFQVHAGK RPYKCTTPGC SKIYKFVSDF TRHKRRCKPQ R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	462	468	RRRGKRK
2	462	469	RRRGKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	6e-41	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G03550.1