PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G39130.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 837aa MW: 90605.8 Da PI: 5.7169

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G39130.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35	2.5e-11	664	712	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + +k Ka++L + ++Y++sLq ONIVA02G39130.1 664 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 712 58************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 837 aa Download sequence
MKLRLRSMDQ RGGAGGAAET HRVQLPDTAT LSDVKAFLAT KLSAAQPVPA ESVRLTLNRS 60 EELLTPDPSA TLPALGLASG DLLYFTLSPL PSPSPPPQPQ PQAQPLPRNP NPDVPSIAGA 120 ADPTKSPVES GSSSSMPQAL CTNPGLPVAS DPHHPPPDVV MAEAFAVIKS KSSLVVGATK 180 REMENVGGAD GTVICRLVVA LHAALLDAGF LYANPVGSCL QLPQSGSFVP VSMKYTLPEL 240 VEALPAVEEG MVAVLNYSLM GNFMMVYGHV PGATSGVRRL CLELPELAPL LYLDSDEVST 300 AEEREIHELW RVLKDEMCLP LMISLCQLNN LSLPPCLMAL PGDVKAKVLE FVPGVDLARV 360 QCTCKELRDL AADDNLWKKK CEMEFNTQDT CGCMMCKCIY SDQRKDIVLA DKYTCGNYMQ 420 KPVSQPGRWL IILVYHSLLC QYITIGLSLL WYHLVDLVQP QRSKYKNPIR CQHTSACRWQ 480 DAPAAGIHFD CIIPLPINPY QLPPSAGACC STTQASASAK DGGNVLQIPK PLEMYSPPCS 540 AAASSQGHCF AVGANQLASL DLAMDFDEPI LFPVHNASLQ EGIQFYNPTG DTQLSRNMSI 600 DKCLKGSKRK GSGEGSSSLH SQEETGEMPQ RELSMEHAGE KAGDADASRE EYVHVRAKRG 660 QATNSHSLAE RFRREKINER MKLLQDLVPG CNKITGKAMM LDEIINYVQS LQRQVEFLSM 720 KLSTISPELN SDLDLQDILC SQDARSAFLG CSPQLSNAHP NLYRAAQQCL SPPGLYGSVC 780 VPNPADVHLA RAGHLASFPQ QRGLIWNEEL RNIAPAGFAS DAAGTSSLEN SDSMKVE

Sequence ? help Back to Top

Protein Sequence Length: 837 aa Download sequence

MKLRLRSMDQ RGGAGGAAET HRVQLPDTAT LSDVKAFLAT KLSAAQPVPA ESVRLTLNRS  60
EELLTPDPSA TLPALGLASG DLLYFTLSPL PSPSPPPQPQ PQAQPLPRNP NPDVPSIAGA  120
ADPTKSPVES GSSSSMPQAL CTNPGLPVAS DPHHPPPDVV MAEAFAVIKS KSSLVVGATK  180
REMENVGGAD GTVICRLVVA LHAALLDAGF LYANPVGSCL QLPQSGSFVP VSMKYTLPEL  240
VEALPAVEEG MVAVLNYSLM GNFMMVYGHV PGATSGVRRL CLELPELAPL LYLDSDEVST  300
AEEREIHELW RVLKDEMCLP LMISLCQLNN LSLPPCLMAL PGDVKAKVLE FVPGVDLARV  360
QCTCKELRDL AADDNLWKKK CEMEFNTQDT CGCMMCKCIY SDQRKDIVLA DKYTCGNYMQ  420
KPVSQPGRWL IILVYHSLLC QYITIGLSLL WYHLVDLVQP QRSKYKNPIR CQHTSACRWQ  480
DAPAAGIHFD CIIPLPINPY QLPPSAGACC STTQASASAK DGGNVLQIPK PLEMYSPPCS  540
AAASSQGHCF AVGANQLASL DLAMDFDEPI LFPVHNASLQ EGIQFYNPTG DTQLSRNMSI  600
DKCLKGSKRK GSGEGSSSLH SQEETGEMPQ RELSMEHAGE KAGDADASRE EYVHVRAKRG  660
QATNSHSLAE RFRREKINER MKLLQDLVPG CNKITGKAMM LDEIINYVQS LQRQVEFLSM  720
KLSTISPELN SDLDLQDILC SQDARSAFLG CSPQLSNAHP NLYRAAQQCL SPPGLYGSVC  780
VPNPADVHLA RAGHLASFPQ QRGLIWNEEL RNIAPAGFAS DAAGTSSLEN SDSMKVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	3e-45	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G39130.1