PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G06360.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

HD-ZIP

Protein Properties

Length: 311aa MW: 33612.8 Da PI: 4.4149

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G06360.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	5.9e-19	73	125	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ eq+++Le+ F +++++ ++++++A+ lgL+ rqV vWFqNrRa++k ONIVA02G06360.1 73 KRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWK 125 4467789*********************************************9 PP
2	HD-ZIP_I/II	127.8	4.5e-41	71	163	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqv++LE+sF++++kL+p+rK+++ar+LglqprqvavWFqnrRAR+ktkqlE+d++aL++++dal+++ ++L++++++L++e++e ONIVA02G06360.1 71 EKKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLERDFAALRARHDALRADCDALRRDKDALAAEIRE 163 69**************************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MKRPTSSSRK SKKQGEDLAF SEEGSLPAVT MEQKDEAEME EVDEEEEEEV DEDMAGGHAA 60 QSPSPSCGLG EKKRRLALEQ VRALERSFDT DNKLDPDRKA RIARDLGLQP RQVAVWFQNR 120 RARWKTKQLE RDFAALRARH DALRADCDAL RRDKDALAAE IRELREKLPT KPADTAASVK 180 VEAGNDAAAG AAAATVCKDG SSDDSDSSVV FNDEASPYSG AAFIGFGPSF LVDDASAATV 240 GCSSSLPALE SKWHGPYSDD SCKGGVYGFT EEWLAACSGE MAGNDAAGFF SDEHASNLNF 300 GWCASGNEGW E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	128	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	3e-28	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G06360.1