PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G01060.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 865aa MW: 97799.1 Da PI: 7.845

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G01060.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	557	579	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg sF + +Lk+H+++H ONIVA02G01060.2 557 HTCQECGASFQKPAHLKQHMQSH 579 79*******************99 PP
2	zf-C2H2	20.6	1.2e-06	585	609	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dC+ s+ rk++L+rH+ +H ONIVA02G01060.2 585 FICPleDCPFSYIRKDHLNRHMLKH 609 78*********************99 PP
3	zf-C2H2	14.2	0.00013	614	639	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ Cg+ Fs k n++rH + H ONIVA02G01060.2 614 FTCSmdGCGRKFSIKANMQRHVKEiH 639 89********************9988 PP
4	zf-C2H2	14.4	0.00011	651	675	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ C+k+F+ s +k+H +H ONIVA02G01060.2 651 FVCKeeGCNKVFKYASKMKKHEESH 675 89*******************9988 PP
5	zf-C2H2	16.5	2.4e-05	741	765	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C sFs+ksnL++Hi+ H ONIVA02G01060.2 741 KCSfeGCECSFSNKSNLTKHIKAsH 765 688889***************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 865 aa Download sequence
MNRSVCHHLL TQCKTIRELQ RIHAQALTHG LHPNQQSISC KIFRSYAEFG RPADAGRLFD 60 EIPHPDIISF TSLMSLHLKL DHHWKAISVF SHAIASGHRP DGFAAVGALS ASGGLGDQRI 120 GSVVHGLIFR CGLDSELVVC NALVDMYCRC GKFEPARTVF DRMLVKDEVT WGSMLYGYMK 180 CVGVDSALSF FYQMPMKSTV SWTALITGHV QDKQPIQALE LFGKMLLEGH RPNHITIVGV 240 LSACADIGAL DLGRAIHGYG SKSNATTNII VTNALMDMYA KSGSIASAFS VFEEVQMKDA 300 FTWTTMISSF TVQGNGRKAV ELFWDMLRSG ILPNSVTFVS VLSACSHAGL IQEGRELFDK 360 MREVYHIDPR LEHYGCMVDL LGRGGLLEEA EALIDHMDVE PDIVIWRSLL SACLAHGNDR 420 LAEIAGKEII KREPGDDGVY VLLWNMYALS NRWKEALDMR KQMLSRKIYK KPGCSWIEVD 480 GVVHEFLMCS GDDIDGDTRV EATQHRDIRR YKCEFCTVVR SKKCLIRAHM VAHHKEELDK 540 SEIYKSNGEK VVHEGDHTCQ ECGASFQKPA HLKQHMQSHS DERSFICPLE DCPFSYIRKD 600 HLNRHMLKHQ GKLFTCSMDG CGRKFSIKAN MQRHVKEIHE DETATKSNRQ FVCKEEGCNK 660 VFKYASKMKK HEESHVKLDY VEVVCCEPGC MKTFTNVECL RAHNQACHQY VQCDICGEKH 720 LKKNIKRHLR AHEVPSTERI KCSFEGCECS FSNKSNLTKH IKASHDQVKP FACRFTGCEK 780 VFPYKHVRDN HEKSSAHVYT QANFTEMDEH LLSCPRGGRK RKAVTVETLT RKRVTMHGDA 840 SSLDNGTEYL RWLLSGGDDD SSQTH

Sequence ? help Back to Top

Protein Sequence Length: 865 aa Download sequence

MNRSVCHHLL TQCKTIRELQ RIHAQALTHG LHPNQQSISC KIFRSYAEFG RPADAGRLFD  60
EIPHPDIISF TSLMSLHLKL DHHWKAISVF SHAIASGHRP DGFAAVGALS ASGGLGDQRI  120
GSVVHGLIFR CGLDSELVVC NALVDMYCRC GKFEPARTVF DRMLVKDEVT WGSMLYGYMK  180
CVGVDSALSF FYQMPMKSTV SWTALITGHV QDKQPIQALE LFGKMLLEGH RPNHITIVGV  240
LSACADIGAL DLGRAIHGYG SKSNATTNII VTNALMDMYA KSGSIASAFS VFEEVQMKDA  300
FTWTTMISSF TVQGNGRKAV ELFWDMLRSG ILPNSVTFVS VLSACSHAGL IQEGRELFDK  360
MREVYHIDPR LEHYGCMVDL LGRGGLLEEA EALIDHMDVE PDIVIWRSLL SACLAHGNDR  420
LAEIAGKEII KREPGDDGVY VLLWNMYALS NRWKEALDMR KQMLSRKIYK KPGCSWIEVD  480
GVVHEFLMCS GDDIDGDTRV EATQHRDIRR YKCEFCTVVR SKKCLIRAHM VAHHKEELDK  540
SEIYKSNGEK VVHEGDHTCQ ECGASFQKPA HLKQHMQSHS DERSFICPLE DCPFSYIRKD  600
HLNRHMLKHQ GKLFTCSMDG CGRKFSIKAN MQRHVKEIHE DETATKSNRQ FVCKEEGCNK  660
VFKYASKMKK HEESHVKLDY VEVVCCEPGC MKTFTNVECL RAHNQACHQY VQCDICGEKH  720
LKKNIKRHLR AHEVPSTERI KCSFEGCECS FSNKSNLTKH IKASHDQVKP FACRFTGCEK  780
VFPYKHVRDN HEKSSAHVYT QANFTEMDEH LLSCPRGGRK RKAVTVETLT RKRVTMHGDA  840
SSLDNGTEYL RWLLSGGDDD SSQTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-100	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G01060.2