PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G48250.2
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 276aa    MW: 30754.4 Da    PI: 10.6465
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G48250.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.52.3e-2562111251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                      rie+k  rqv fskRr+g++KKA+EL  LCdaeva+++fs+ gklyeyss
  ONIVA01G48250.2  62 RIEDKASRQVRFSKRRAGLFKKAFELALLCDAEVALLVFSPAGKLYEYSS 111
                      8***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MGAPHARPSI PSSSSPTSPH HHTTTHTHAR LRFPPPTRGG EGGELGFFGA GMARRGRVQL  60
RRIEDKASRQ VRFSKRRAGL FKKAFELALL CDAEVALLVF SPAGKLYEYS SSRFYESEGN  120
ELNCFSFTLL YFSVPFRMRF ESRSGLTRFT SFQQLTRSTL VIEGTYDRYQ QFAGARRDLN  180
EGSTSINSDE NASIHSRLRD ISAWSLQNNA DESDANQLEK LEKLLTNTLR DTKSKKMLAK  240
QNGEGSRSRA NSSGSRGQEE GRTVVKVIVG PGPAAW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.13e-18MIKC_MADS family protein