PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G45890.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 740aa    MW: 80737.6 Da    PI: 7.249
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G45890.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS303.93.8e-931574921334
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely.kal..ppsetsekn..sseelaalklfsevsP 89 
                      lv+lL++cAeav+ +d ++a alL +l+  a  +g+++qR+a++f+++La rl    +     a    + + s+       +  al l +e++P
  ONIVA01G45890.1 157 LVQLLVACAEAVACRDRAQAAALLRELQAGAPVHGTAFQRVASCFVQGLADRLPLAHPPALgPASmaFCIPPSSCAgrDGARGEALALAYELCP 250
                      689*************************************************987444332122211222222222345667788889****** PP

             GRAS  90 ilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                      +l+f+h++aN  +lea+ege+ vH++D++++     G QW  Ll+ La+R++g+p ++R+Tgvg+    + ++++++g+ L+ +Ae lg+ +ef
  ONIVA01G45890.1 251 YLRFAHFVANACMLEAFEGESNVHVVDLGMTlgldRGHQWRGLLDGLAARASGKPaRVRVTGVGA----RMDTMRAIGRELEAYAEGLGMYLEF 340
                      ***************************98762222567*************77666*********....9************************ PP

             GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                      +  + + le+l++++L v+ +Ea+a+n+vl+lh++++es    +   +vL+++++lsP+ +v+veq+a hn++ Fl rf+eal+yy+alfd+l+
  ONIVA01G45890.1 341 RG-INRGLESLHIDDLGVDADEAVAINSVLELHSVVKESRGALN---SVLQTIRKLSPRAFVLVEQDAGHNGPFFLGRFMEALHYYAALFDALD 430
                      **.799******************************88877777...8********************************************** PP

             GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                      a lpr +  r+ vE++ +g ei+nvv cega+r+erhe++ +Wr+r+++aGF++vp++  a 
  ONIVA01G45890.1 431 AALPRYDARRARVEQFHFGAEIRNVVGCEGAARVERHERADQWRRRMSRAGFQSVPIKMAAK 492
                      ********************************************************987765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    
MGMSPEPCKS ISDCSQQQSH HLTLTQQQDS TIICTNQELD YYYRFYDVDE AAFDGNEVEL  60
VSRFSKVTRM DHMISSPYQP TWSPAQAAVD VVGSSETSRV RKKRFWDVLE SCKQKVEAME  120
AMDTPATATF RVGAGDGGSG GGGGAGGGGG GADGMRLVQL LVACAEAVAC RDRAQAAALL  180
RELQAGAPVH GTAFQRVASC FVQGLADRLP LAHPPALGPA SMAFCIPPSS CAGRDGARGE  240
ALALAYELCP YLRFAHFVAN ACMLEAFEGE SNVHVVDLGM TLGLDRGHQW RGLLDGLAAR  300
ASGKPARVRV TGVGARMDTM RAIGRELEAY AEGLGMYLEF RGINRGLESL HIDDLGVDAD  360
EAVAINSVLE LHSVVKESRG ALNSVLQTIR KLSPRAFVLV EQDAGHNGPF FLGRFMEALH  420
YYAALFDALD AALPRYDARR ARVEQFHFGA EIRNVVGCEG AARVERHERA DQWRRRMSRA  480
GFQSVPIKMA AKAREQFGYT SPRSSLMAAD PSPQMHKTKK LVRVRKQVEV VLPVEVLPPL  540
PPLAVICKHK EHVWITQDDY TFRLLDINLV LTLAAVGCAG LGFFLFPRNR ALGMALAAAF  600
FVGFFAHAKA SMLLHWDVFP RFVLAILDRG RRLMAVACVA IVVVCVLRFG TQDGVRRATL  660
FIWTVAMALA ALTGWVLRVE RRVSAAAEFV ELDGDTSLWI IRKDGRLAAV ADIEGDTTKK  720
SYLFYYDVDD AGFGGNEVEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-45GRAS family protein