PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G44820.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 407aa MW: 42085.5 Da PI: 6.3063

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G44820.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8e-05	103	125	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F ++ + H+r+H ONIVA01G44820.1 103 FPCHVCSKEFGSRKAVHGHMRVH 125 89*******************99 PP
2	zf-C2H2	16.8	1.9e-05	296	318	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk Fs+ L H+r+H ONIVA01G44820.1 296 HPCKTCGKEFSTGVALGGHMRKH 318 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MEEGEIHPGG GGGGGYYDSG SETEDDDDRY VFQSRRDEEE EGVNPASKRR RLEDILAETR 60 GALPLPSPTP SSSGSEGTIS DDHGDGIAGA AGAADAPVAR VAFPCHVCSK EFGSRKAVHG 120 HMRVHQADKD KEKEPSLHLA LGWTTTGKRG ANGNARAVTV AFAPMEQAVG DDDGDARAIV 180 LAPAAQPQPQ PMVVAEAANP PNQVADDNHR LPVPAAAPYV GAAAAPARRR ARPKRNAGQG 240 GPYRCSYPGC KGEYRTHQGL GGHVAGHINR EKQAAAAAQG GSGGGLGGGA RPEGNHPCKT 300 CGKEFSTGVA LGGHMRKHYD PKKKKKHAGL VLTLSVAPPT PAPAPSIAGA ALPPAEVKAD 360 VDEHEAEQVP MAPVSPPAEA RGNIVRIFGV DIEKPADEEE QEGGSDV

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MEEGEIHPGG GGGGGYYDSG SETEDDDDRY VFQSRRDEEE EGVNPASKRR RLEDILAETR  60
GALPLPSPTP SSSGSEGTIS DDHGDGIAGA AGAADAPVAR VAFPCHVCSK EFGSRKAVHG  120
HMRVHQADKD KEKEPSLHLA LGWTTTGKRG ANGNARAVTV AFAPMEQAVG DDDGDARAIV  180
LAPAAQPQPQ PMVVAEAANP PNQVADDNHR LPVPAAAPYV GAAAAPARRR ARPKRNAGQG  240
GPYRCSYPGC KGEYRTHQGL GGHVAGHINR EKQAAAAAQG GSGGGLGGGA RPEGNHPCKT  300
CGKEFSTGVA LGGHMRKHYD PKKKKKHAGL VLTLSVAPPT PAPAPSIAGA ALPPAEVKAD  360
VDEHEAEQVP MAPVSPPAEA RGNIVRIFGV DIEKPADEEE QEGGSDV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	48	52	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46080.1	3e-09	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G44820.1