PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G46080.1 | ||||||||
Common Name | F12M12.50, ZAT8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 164aa MW: 17739.5 Da PI: 9.8279 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.00019 | 85 | 107 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F+ L H+r+H AT3G46080.1 85 HPCPICGVEFPMGQALGGHMRRH 107 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.23E-7 | 35 | 107 | No hit | No description |
Pfam | PF13912 | 8.2E-12 | 36 | 61 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.995 | 37 | 59 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1 | 37 | 59 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 39 | 59 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.658 | 85 | 112 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.5E-12 | 85 | 110 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.079 | 85 | 107 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 87 | 107 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MVARSEEVEI VEDTAAKCLM LLSRVGECGG GGEKRVFRCK TCLKEFSSFQ ALGGHRASHK 60 KLINSSDPSL LGSLSNKKTK TATSHPCPIC GVEFPMGQAL GGHMRRHRSE KASPGTLVTR 120 SFLPETTTVT TLKKSSSGKR VACLDLDSME SLVNWKLELG RTIS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.49395 | 0.0 | leaf| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT3G46080 | |||||
AtGenExpress | AT3G46080 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G46080.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G46080 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL355775 | 0.0 | AL355775.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F12M12. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_190194.1 | 1e-116 | C2H2-type zinc finger family protein | ||||
Swissprot | Q9LX85 | 1e-117 | ZAT8_ARATH; Zinc finger protein ZAT8 | ||||
TrEMBL | A0A178V7P0 | 1e-113 | A0A178V7P0_ARATH; Uncharacterized protein | ||||
STRING | AT3G46080.1 | 1e-116 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2028 | 18 | 76 | Representative plant | OGRP131 | 15 | 149 |
Link Out ? help Back to Top | |
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Phytozome | AT3G46080.1 |
Entrez Gene | 823751 |
iHOP | AT3G46080 |
wikigenes | AT3G46080 |