PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G41850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WOX | ||||||||
Protein Properties | Length: 313aa MW: 33206.4 Da PI: 9.9192 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.8 | 1.2e-20 | 43 | 102 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 R+t+tkeq+ +Le l+++ r+p+ae++++++++l +++ ++V++WFqN++a++++ ONIVA01G41850.1 43 ARWTPTKEQIAVLEGLYRQgLRTPTAEQIQQITARLrehgHIEGKNVFYWFQNHKARQRQ 102 7*****************99**************************************96 PP | |||||||
2 | Wus_type_Homeobox | 115.5 | 2.6e-37 | 42 | 104 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RWtPt+eQi +Le ly++GlrtP++e+iq+ita+L+e+G+ie+kNVfyWFQN+kaR+rqkq ONIVA01G41850.1 42 NARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKARQRQKQ 104 78***********************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence |
METTTTTLGG GGGGRAGGFS DPPSPLSPPL SPASAAAAAL ANARWTPTKE QIAVLEGLYR 60 QGLRTPTAEQ IQQITARLRE HGHIEGKNVF YWFQNHKARQ RQKQKQQSFD YFSKLFRRPP 120 PLPVLHRPLA RPFPLAMAPT AMPPPPPPPA TTTTAACNAG GVMFRTPSFM PVATNNASYY 180 PQQQTPLLYP GMEVCPHDKS TAQPPATTTM YLQAPPSSAH LAAAAGRGAA EAEGHGRRGG 240 GAGGRETLQL FPLQPTFVLP DHKPLRAGSA CAAVSPTTPS ASASFSWESE SSDSPSSEAP 300 PFYDFFGVHS GGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 1e-27 | WOX family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA01G41850.1 |