PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G39120.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 280aa    MW: 30604.9 Da    PI: 4.7947
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G39120.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.91.9e-16119167355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+G+r+++ +grW +eIrdp+    +  r +lg+f+ta eAa a++a +++++g
  ONIVA01G39120.1 119 YHGIRQRP-WGRWSSEIRDPV----KgVRLWLGTFDTAVEAALAYDAEARRIHG 167
                      89******.**********75....44************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MCGGEVIPAD MPAAPFTPRH GDGETWVDRK RRNKKKRKRG ADEEWEAAFQ EFMAADDDDD  60
GGGLVLSSKS LVLRSPGEND AGRGAAATMS MPLDPVTEEA EPAVAEKPRR RRPRRSYEYH  120
GIRQRPWGRW SSEIRDPVKG VRLWLGTFDT AVEAALAYDA EARRIHGWKA RTNFPPADLS  180
SPPPPSQPLC FLLNDNGLIT IGEAPTDDAA STSTSTTEAS GDARIQLECC SDDVMDSLLA  240
GYDVASGDDI WTWTSGASST SVNQEIKTPS IHQNISYAVR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12939RKRRNKKKRKR
23039KRRNKKKRKR
33139RRNKKKRKR
4107114KPRRRRPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.14e-18ERF family protein