PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G27550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 228aa MW: 24991.4 Da PI: 8.8657 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.1 | 1.4e-18 | 77 | 130 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++keq + Lee F+ n++++ +++e LA kl+L rqV vWFqNrRa+ k ONIVA01G27550.1 77 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTK 130 67789***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 121.1 | 5.7e-39 | 77 | 164 | 2 | 89 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kk+rlskeq++lLEesF+ +++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr++ +l+een+rL++eveeLr+ ONIVA01G27550.1 77 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRA 164 9*************************************************************************************94 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence |
MGATSPSGLE LTMAVPGLSS SGSEGAGCNN NNAGGGCNMR DLDINQPASG GEEEEFPMGS 60 VEEDEEERGV GGPHRPKKLR LSKEQSRLLE ESFRLNHTLT PKQKEALAIK LKLRPRQVEV 120 WFQNRRARTK LKQTEMECEY LKRCFGSLTE ENRRLQREVE ELRAMRVAPP TVLSPHTRQP 180 LPASALTMCP RCERITAATG PPAVRPPPSS AAAAAPSPFH PRRPSAAF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 133 | RRARTKLKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 7e-62 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA01G27550.1 |